Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1591

Experiment: 9 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1590 and DvMF_1591 are separated by 242 nucleotidesDvMF_1591 and DvMF_1592 are separated by 978 nucleotides DvMF_1590: DvMF_1590 - glutamine synthetase catalytic region (RefSeq), at 1,960,345 to 1,962,525 _1590 DvMF_1591: DvMF_1591 - hypothetical protein (RefSeq), at 1,962,768 to 1,963,142 _1591 DvMF_1592: DvMF_1592 - hypothetical protein (RefSeq), at 1,964,121 to 1,965,011 _1592 Position (kb) 1962 1963 1964Strain fitness (log2 ratio) -1 0 1at 1962.525 kb on + strandat 1962.990 kb on - strand, within DvMF_1591at 1963.010 kb on - strand, within DvMF_1591at 1963.118 kb on - strandat 1963.137 kb on + strandat 1963.359 kb on + strandat 1963.559 kb on + strandat 1963.611 kb on - strandat 1963.875 kb on - strandat 1963.942 kb on - strandat 1963.944 kb on - strandat 1963.990 kb on - strandat 1964.136 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
remove
1,962,525 + -0.6
1,962,990 - DvMF_1591 0.59 -0.8
1,963,010 - DvMF_1591 0.65 -0.3
1,963,118 - +0.4
1,963,137 + +0.2
1,963,359 + -0.3
1,963,559 + +0.7
1,963,611 - -0.3
1,963,875 - +0.8
1,963,942 - -0.1
1,963,944 - +0.3
1,963,990 - +0.2
1,964,136 + -0.2

Or see this region's nucleotide sequence