Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1244

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1243 and DvMF_1244 are separated by 89 nucleotidesDvMF_1244 and DvMF_1245 are separated by 213 nucleotides DvMF_1243: DvMF_1243 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,533,044 to 1,535,248 _1243 DvMF_1244: DvMF_1244 - hypothetical protein (RefSeq), at 1,535,338 to 1,536,393 _1244 DvMF_1245: DvMF_1245 - molybdopterin oxidoreductase (RefSeq), at 1,536,607 to 1,539,450 _1245 Position (kb) 1535 1536 1537Strain fitness (log2 ratio) -2 -1 0 1at 1534.356 kb on - strand, within DvMF_1243at 1534.366 kb on - strand, within DvMF_1243at 1534.507 kb on + strand, within DvMF_1243at 1534.625 kb on + strand, within DvMF_1243at 1534.680 kb on - strand, within DvMF_1243at 1534.682 kb on + strand, within DvMF_1243at 1534.690 kb on - strand, within DvMF_1243at 1535.001 kb on + strand, within DvMF_1243at 1535.009 kb on - strand, within DvMF_1243at 1535.059 kb on + strandat 1535.067 kb on - strandat 1535.281 kb on + strandat 1535.281 kb on + strandat 1535.281 kb on + strandat 1535.430 kb on - strandat 1535.463 kb on + strand, within DvMF_1244at 1535.552 kb on + strand, within DvMF_1244at 1535.741 kb on - strand, within DvMF_1244at 1535.741 kb on - strand, within DvMF_1244at 1535.874 kb on + strand, within DvMF_1244at 1536.004 kb on + strand, within DvMF_1244at 1536.077 kb on + strand, within DvMF_1244at 1536.163 kb on - strand, within DvMF_1244at 1536.283 kb on - strand, within DvMF_1244at 1536.499 kb on + strandat 1536.917 kb on - strand, within DvMF_1245at 1536.974 kb on - strand, within DvMF_1245at 1537.048 kb on - strand, within DvMF_1245at 1537.048 kb on - strand, within DvMF_1245at 1537.300 kb on + strand, within DvMF_1245at 1537.373 kb on - strand, within DvMF_1245

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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1,534,356 - DvMF_1243 0.60 -0.2
1,534,366 - DvMF_1243 0.60 +0.3
1,534,507 + DvMF_1243 0.66 -0.0
1,534,625 + DvMF_1243 0.72 +0.3
1,534,680 - DvMF_1243 0.74 -0.2
1,534,682 + DvMF_1243 0.74 -0.8
1,534,690 - DvMF_1243 0.75 -0.1
1,535,001 + DvMF_1243 0.89 -0.2
1,535,009 - DvMF_1243 0.89 -0.1
1,535,059 + +0.8
1,535,067 - -0.1
1,535,281 + -0.1
1,535,281 + -0.0
1,535,281 + -0.0
1,535,430 - +0.6
1,535,463 + DvMF_1244 0.12 -0.2
1,535,552 + DvMF_1244 0.20 -1.6
1,535,741 - DvMF_1244 0.38 +0.4
1,535,741 - DvMF_1244 0.38 -0.0
1,535,874 + DvMF_1244 0.51 -0.1
1,536,004 + DvMF_1244 0.63 -0.5
1,536,077 + DvMF_1244 0.70 -0.7
1,536,163 - DvMF_1244 0.78 +0.4
1,536,283 - DvMF_1244 0.89 -0.1
1,536,499 + -1.8
1,536,917 - DvMF_1245 0.11 +0.4
1,536,974 - DvMF_1245 0.13 -0.3
1,537,048 - DvMF_1245 0.16 +0.8
1,537,048 - DvMF_1245 0.16 +0.6
1,537,300 + DvMF_1245 0.24 +0.8
1,537,373 - DvMF_1245 0.27 +0.1

Or see this region's nucleotide sequence