Experiment: 9 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1000 and DvMF_1001 are separated by 96 nucleotides DvMF_1001 and DvMF_1002 overlap by 4 nucleotides
DvMF_1000: DvMF_1000 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 1,215,217 to 1,216,215
_1000
DvMF_1001: DvMF_1001 - biotin synthase (RefSeq), at 1,216,312 to 1,217,406
_1001
DvMF_1002: DvMF_1002 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq), at 1,217,403 to 1,218,878
_1002
Position (kb)
1216
1217
1218 Strain fitness (log2 ratio)
-1
0
1 at 1215.589 kb on + strand, within DvMF_1000 at 1215.897 kb on - strand, within DvMF_1000 at 1215.957 kb on + strand, within DvMF_1000 at 1215.965 kb on - strand, within DvMF_1000 at 1215.965 kb on - strand, within DvMF_1000 at 1216.096 kb on - strand, within DvMF_1000 at 1216.935 kb on + strand, within DvMF_1001 at 1216.943 kb on - strand, within DvMF_1001 at 1217.149 kb on + strand, within DvMF_1001 at 1217.288 kb on + strand, within DvMF_1001 at 1217.337 kb on + strand at 1217.435 kb on - strand at 1217.492 kb on + strand at 1217.492 kb on + strand at 1217.492 kb on + strand at 1217.500 kb on - strand at 1217.513 kb on + strand at 1217.636 kb on - strand, within DvMF_1002 at 1217.726 kb on - strand, within DvMF_1002 at 1217.778 kb on - strand, within DvMF_1002 at 1217.952 kb on - strand, within DvMF_1002 at 1217.972 kb on - strand, within DvMF_1002 at 1217.996 kb on + strand, within DvMF_1002 at 1218.112 kb on + strand, within DvMF_1002 at 1218.319 kb on + strand, within DvMF_1002
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 37C remove 1,215,589 + DvMF_1000 0.37 +0.5 1,215,897 - DvMF_1000 0.68 +1.2 1,215,957 + DvMF_1000 0.74 +1.1 1,215,965 - DvMF_1000 0.75 +1.1 1,215,965 - DvMF_1000 0.75 +1.5 1,216,096 - DvMF_1000 0.88 +1.3 1,216,935 + DvMF_1001 0.57 +0.3 1,216,943 - DvMF_1001 0.58 -0.4 1,217,149 + DvMF_1001 0.76 +0.3 1,217,288 + DvMF_1001 0.89 -0.5 1,217,337 + +0.7 1,217,435 - -0.8 1,217,492 + -0.2 1,217,492 + -0.2 1,217,492 + +1.3 1,217,500 - +0.0 1,217,513 + +0.2 1,217,636 - DvMF_1002 0.16 +0.1 1,217,726 - DvMF_1002 0.22 -1.1 1,217,778 - DvMF_1002 0.25 +0.4 1,217,952 - DvMF_1002 0.37 +0.0 1,217,972 - DvMF_1002 0.39 -0.1 1,217,996 + DvMF_1002 0.40 -0.0 1,218,112 + DvMF_1002 0.48 +0.5 1,218,319 + DvMF_1002 0.62 -0.3
Or see this region's nucleotide sequence