Experiment: 9 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0914 and DvMF_0915 are separated by 2 nucleotides DvMF_0915 and DvMF_0916 are separated by 89 nucleotides DvMF_0916 and DvMF_0917 are separated by 263 nucleotides
DvMF_0914: DvMF_0914 - ABC transporter related (RefSeq), at 1,099,755 to 1,100,543
_0914
DvMF_0915: DvMF_0915 - SufBD protein (RefSeq), at 1,100,546 to 1,101,712
_0915
DvMF_0916: DvMF_0916 - YCII-related (RefSeq), at 1,101,802 to 1,102,089
_0916
DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161
_0917
Position (kb) 1100
1101
1102 Strain fitness (log2 ratio) -2
-1
0
1 at 1099.584 kb on - strand at 1099.691 kb on - strand at 1099.691 kb on - strand at 1101.744 kb on + strand at 1101.780 kb on - strand at 1101.979 kb on - strand, within DvMF_0916 at 1102.030 kb on - strand, within DvMF_0916 at 1102.082 kb on - strand at 1102.265 kb on + strand at 1102.481 kb on + strand at 1102.510 kb on - strand at 1102.550 kb on - strand, within DvMF_0917 at 1102.649 kb on + strand, within DvMF_0917
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 37C remove 1,099,584 - -0.2 1,099,691 - -1.6 1,099,691 - -2.0 1,101,744 + -0.5 1,101,780 - -1.1 1,101,979 - DvMF_0916 0.61 -0.6 1,102,030 - DvMF_0916 0.79 -0.5 1,102,082 - +0.3 1,102,265 + -0.9 1,102,481 + -0.2 1,102,510 - -1.1 1,102,550 - DvMF_0917 0.11 +0.2 1,102,649 + DvMF_0917 0.16 -0.6
Or see this region's nucleotide sequence