Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0865

Experiment: 9 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0864 and DvMF_0865 are separated by 90 nucleotidesDvMF_0865 and DvMF_0866 are separated by 84 nucleotides DvMF_0864: DvMF_0864 - UTP-GlnB uridylyltransferase, GlnD (RefSeq), at 1,040,277 to 1,043,180 _0864 DvMF_0865: DvMF_0865 - nitrogen regulatory protein P-II (RefSeq), at 1,043,271 to 1,043,609 _0865 DvMF_0866: DvMF_0866 - ammonium transporter (RefSeq), at 1,043,694 to 1,044,902 _0866 Position (kb) 1043 1044Strain fitness (log2 ratio) -2 -1 0 1at 1042.383 kb on + strand, within DvMF_0864at 1042.461 kb on + strand, within DvMF_0864at 1042.713 kb on + strand, within DvMF_0864at 1042.733 kb on - strand, within DvMF_0864at 1042.738 kb on + strand, within DvMF_0864at 1042.786 kb on + strand, within DvMF_0864at 1042.833 kb on + strand, within DvMF_0864at 1043.082 kb on - strandat 1043.369 kb on - strand, within DvMF_0865at 1043.477 kb on - strand, within DvMF_0865at 1043.523 kb on + strand, within DvMF_0865at 1043.877 kb on - strand, within DvMF_0866at 1043.893 kb on - strand, within DvMF_0866at 1044.106 kb on - strand, within DvMF_0866at 1044.185 kb on - strand, within DvMF_0866at 1044.285 kb on + strand, within DvMF_0866at 1044.315 kb on - strand, within DvMF_0866at 1044.350 kb on - strand, within DvMF_0866at 1044.397 kb on + strand, within DvMF_0866at 1044.582 kb on - strand, within DvMF_0866

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
remove
1,042,383 + DvMF_0864 0.73 +0.1
1,042,461 + DvMF_0864 0.75 +1.4
1,042,713 + DvMF_0864 0.84 -0.2
1,042,733 - DvMF_0864 0.85 +0.2
1,042,738 + DvMF_0864 0.85 +0.3
1,042,786 + DvMF_0864 0.86 +0.1
1,042,833 + DvMF_0864 0.88 -0.1
1,043,082 - +0.2
1,043,369 - DvMF_0865 0.29 +0.9
1,043,477 - DvMF_0865 0.61 -0.1
1,043,523 + DvMF_0865 0.74 -0.3
1,043,877 - DvMF_0866 0.15 -0.6
1,043,893 - DvMF_0866 0.16 -0.4
1,044,106 - DvMF_0866 0.34 +0.8
1,044,185 - DvMF_0866 0.41 +0.3
1,044,285 + DvMF_0866 0.49 -0.4
1,044,315 - DvMF_0866 0.51 -0.2
1,044,350 - DvMF_0866 0.54 +0.4
1,044,397 + DvMF_0866 0.58 -2.5
1,044,582 - DvMF_0866 0.73 -0.4

Or see this region's nucleotide sequence