Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0556

Experiment: 9 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0555 and DvMF_0556 overlap by 20 nucleotidesDvMF_0556 and DvMF_0557 are separated by 24 nucleotides DvMF_0555: DvMF_0555 - Peptide chain release factor 2 (NCBI), at 655,655 to 656,786 _0555 DvMF_0556: DvMF_0556 - diguanylate cyclase (RefSeq), at 656,767 to 657,711 _0556 DvMF_0557: DvMF_0557 - flagellar synthesis regulator FleN, putative (RefSeq), at 657,736 to 658,554 _0557 Position (kb) 656 657 658Strain fitness (log2 ratio) -1 0 1 2 3at 656.749 kb on - strandat 657.094 kb on - strand, within DvMF_0556at 657.103 kb on + strand, within DvMF_0556at 657.234 kb on - strand, within DvMF_0556at 657.315 kb on - strand, within DvMF_0556at 657.315 kb on - strand, within DvMF_0556at 657.356 kb on - strand, within DvMF_0556at 657.430 kb on - strand, within DvMF_0556at 657.585 kb on - strand, within DvMF_0556at 657.803 kb on - strandat 657.928 kb on + strand, within DvMF_0557at 658.140 kb on - strand, within DvMF_0557at 658.205 kb on + strand, within DvMF_0557at 658.386 kb on + strand, within DvMF_0557at 658.534 kb on + strandat 658.625 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
remove
656,749 - -1.5
657,094 - DvMF_0556 0.35 +2.9
657,103 + DvMF_0556 0.36 +2.3
657,234 - DvMF_0556 0.49 +2.6
657,315 - DvMF_0556 0.58 +2.7
657,315 - DvMF_0556 0.58 +2.3
657,356 - DvMF_0556 0.62 +1.7
657,430 - DvMF_0556 0.70 +2.5
657,585 - DvMF_0556 0.87 +1.0
657,803 - +1.6
657,928 + DvMF_0557 0.23 +2.1
658,140 - DvMF_0557 0.49 +2.2
658,205 + DvMF_0557 0.57 +1.9
658,386 + DvMF_0557 0.79 +2.1
658,534 + +0.4
658,625 - -0.7

Or see this region's nucleotide sequence