Experiment: 9 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0353 and DvMF_0354 are separated by 96 nucleotides DvMF_0354 and DvMF_0355 are separated by 16 nucleotides DvMF_0355 and DvMF_0356 are separated by 461 nucleotides
DvMF_0353: DvMF_0353 - diaminopimelate decarboxylase (RefSeq), at 410,826 to 412,076
_0353
DvMF_0354: DvMF_0354 - hypothetical protein (RefSeq), at 412,173 to 412,694
_0354
DvMF_0355: DvMF_0355 - DNA mismatch repair protein MutS (RefSeq), at 412,711 to 415,443
_0355
DvMF_0356: DvMF_0356 - Tetratricopeptide TPR_4 (RefSeq), at 415,905 to 417,113
_0356
Position (kb) 412
413
414
415
416 Strain fitness (log2 ratio) -2
-1
0
1 at 411.894 kb on + strand, within DvMF_0353 at 411.995 kb on - strand at 412.093 kb on - strand at 412.120 kb on + strand at 412.253 kb on + strand, within DvMF_0354 at 412.260 kb on + strand, within DvMF_0354 at 412.260 kb on + strand, within DvMF_0354 at 412.789 kb on - strand at 412.826 kb on + strand at 412.834 kb on - strand at 412.959 kb on - strand at 412.987 kb on - strand, within DvMF_0355 at 413.286 kb on - strand, within DvMF_0355 at 413.441 kb on - strand, within DvMF_0355 at 413.520 kb on - strand, within DvMF_0355 at 413.666 kb on - strand, within DvMF_0355 at 413.851 kb on + strand, within DvMF_0355 at 413.862 kb on + strand, within DvMF_0355 at 414.012 kb on + strand, within DvMF_0355 at 414.133 kb on - strand, within DvMF_0355 at 414.174 kb on - strand, within DvMF_0355 at 414.179 kb on + strand, within DvMF_0355 at 414.228 kb on - strand, within DvMF_0355 at 414.245 kb on - strand, within DvMF_0355 at 414.342 kb on + strand, within DvMF_0355 at 414.423 kb on - strand, within DvMF_0355 at 414.478 kb on + strand, within DvMF_0355 at 414.613 kb on - strand, within DvMF_0355 at 414.745 kb on - strand, within DvMF_0355 at 414.750 kb on - strand, within DvMF_0355 at 414.813 kb on + strand, within DvMF_0355 at 414.888 kb on + strand, within DvMF_0355 at 414.896 kb on - strand, within DvMF_0355 at 414.908 kb on + strand, within DvMF_0355 at 414.932 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.072 kb on - strand, within DvMF_0355 at 415.107 kb on + strand, within DvMF_0355 at 415.125 kb on - strand, within DvMF_0355 at 415.212 kb on + strand at 415.298 kb on - strand at 415.312 kb on + strand at 415.441 kb on + strand at 415.746 kb on - strand at 415.819 kb on + strand at 415.827 kb on - strand at 415.827 kb on - strand at 415.893 kb on + strand at 415.901 kb on - strand at 415.972 kb on - strand at 415.974 kb on - strand at 416.237 kb on + strand, within DvMF_0356 at 416.415 kb on - strand, within DvMF_0356
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 37C remove 411,894 + DvMF_0353 0.85 +0.1 411,995 - -0.9 412,093 - -0.4 412,120 + +0.2 412,253 + DvMF_0354 0.15 -1.1 412,260 + DvMF_0354 0.17 -2.2 412,260 + DvMF_0354 0.17 -0.5 412,789 - +0.4 412,826 + -0.2 412,834 - +0.2 412,959 - +1.0 412,987 - DvMF_0355 0.10 -0.1 413,286 - DvMF_0355 0.21 -0.5 413,441 - DvMF_0355 0.27 -1.5 413,520 - DvMF_0355 0.30 -0.3 413,666 - DvMF_0355 0.35 +0.3 413,851 + DvMF_0355 0.42 +0.4 413,862 + DvMF_0355 0.42 -0.3 414,012 + DvMF_0355 0.48 +0.5 414,133 - DvMF_0355 0.52 -0.6 414,174 - DvMF_0355 0.54 +0.3 414,179 + DvMF_0355 0.54 +1.0 414,228 - DvMF_0355 0.56 +0.4 414,245 - DvMF_0355 0.56 +0.8 414,342 + DvMF_0355 0.60 +0.8 414,423 - DvMF_0355 0.63 -0.0 414,478 + DvMF_0355 0.65 -0.2 414,613 - DvMF_0355 0.70 -0.3 414,745 - DvMF_0355 0.74 +0.2 414,750 - DvMF_0355 0.75 -0.2 414,813 + DvMF_0355 0.77 +0.3 414,888 + DvMF_0355 0.80 +0.1 414,896 - DvMF_0355 0.80 -0.7 414,908 + DvMF_0355 0.80 +0.7 414,932 + DvMF_0355 0.81 +0.1 415,064 + DvMF_0355 0.86 +0.1 415,064 + DvMF_0355 0.86 -0.4 415,072 - DvMF_0355 0.86 -0.3 415,107 + DvMF_0355 0.88 +0.4 415,125 - DvMF_0355 0.88 +0.3 415,212 + +0.6 415,298 - -1.2 415,312 + +0.8 415,441 + +0.9 415,746 - -0.4 415,819 + -0.2 415,827 - -0.2 415,827 - +0.1 415,893 + -0.8 415,901 - +0.4 415,972 - -1.1 415,974 - -0.9 416,237 + DvMF_0356 0.27 -0.6 416,415 - DvMF_0356 0.42 -0.9
Or see this region's nucleotide sequence