Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0193

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0192 and DvMF_0193 are separated by 208 nucleotidesDvMF_0193 and DvMF_0194 are separated by 483 nucleotides DvMF_0192: DvMF_0192 - ATP-dependent helicase HrpB (RefSeq), at 208,626 to 211,379 _0192 DvMF_0193: DvMF_0193 - hypothetical protein (RefSeq), at 211,588 to 212,277 _0193 DvMF_0194: DvMF_0194 - protein of unknown function DUF161 (RefSeq), at 212,761 to 213,405 _0194 Position (kb) 211 212 213Strain fitness (log2 ratio) -1 0 1at 210.724 kb on - strand, within DvMF_0192at 210.838 kb on - strand, within DvMF_0192at 211.053 kb on - strand, within DvMF_0192at 211.514 kb on + strandat 211.594 kb on + strandat 211.738 kb on - strand, within DvMF_0193at 212.305 kb on + strandat 212.479 kb on - strandat 212.713 kb on - strandat 212.836 kb on - strand, within DvMF_0194at 212.853 kb on + strand, within DvMF_0194at 212.874 kb on - strand, within DvMF_0194at 212.900 kb on + strand, within DvMF_0194at 212.900 kb on + strand, within DvMF_0194at 212.908 kb on - strand, within DvMF_0194at 212.929 kb on - strand, within DvMF_0194

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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210,724 - DvMF_0192 0.76 -1.0
210,838 - DvMF_0192 0.80 +1.0
211,053 - DvMF_0192 0.88 +0.2
211,514 + +0.2
211,594 + -0.5
211,738 - DvMF_0193 0.22 -0.4
212,305 + +0.2
212,479 - -0.6
212,713 - +0.5
212,836 - DvMF_0194 0.12 +1.3
212,853 + DvMF_0194 0.14 -0.0
212,874 - DvMF_0194 0.18 -0.7
212,900 + DvMF_0194 0.22 -0.0
212,900 + DvMF_0194 0.22 +0.4
212,908 - DvMF_0194 0.23 -0.0
212,929 - DvMF_0194 0.26 +0.4

Or see this region's nucleotide sequence