Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_979

Experiment: Chloride 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_978 and Pf6N2E2_979 are separated by 14 nucleotidesPf6N2E2_979 and Pf6N2E2_980 are separated by 159 nucleotides Pf6N2E2_978 - Protein with ParB-like nuclease domain in PFGI-1-like cluster, at 1,145,870 to 1,147,453 _978 Pf6N2E2_979 - hypothetical protein, at 1,147,468 to 1,147,602 _979 Pf6N2E2_980 - Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like, at 1,147,762 to 1,148,598 _980 Position (kb) 1147 1148Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1146.575 kb on + strand, within Pf6N2E2_978at 1146.648 kb on - strand, within Pf6N2E2_978at 1146.836 kb on + strand, within Pf6N2E2_978at 1146.837 kb on - strand, within Pf6N2E2_978at 1146.872 kb on + strand, within Pf6N2E2_978at 1146.872 kb on + strand, within Pf6N2E2_978at 1147.203 kb on + strand, within Pf6N2E2_978at 1147.203 kb on + strand, within Pf6N2E2_978at 1147.204 kb on - strand, within Pf6N2E2_978at 1147.204 kb on - strand, within Pf6N2E2_978at 1147.281 kb on + strand, within Pf6N2E2_978at 1147.348 kb on + strandat 1147.349 kb on - strandat 1147.355 kb on - strandat 1147.355 kb on - strandat 1147.588 kb on + strand, within Pf6N2E2_979at 1147.659 kb on + strandat 1147.659 kb on + strandat 1147.660 kb on - strandat 1147.660 kb on - strandat 1147.743 kb on + strandat 1147.743 kb on + strandat 1147.791 kb on + strandat 1147.791 kb on + strandat 1147.951 kb on + strand, within Pf6N2E2_980at 1147.951 kb on + strand, within Pf6N2E2_980at 1147.951 kb on + strand, within Pf6N2E2_980at 1147.951 kb on + strand, within Pf6N2E2_980at 1147.952 kb on - strand, within Pf6N2E2_980at 1147.961 kb on - strand, within Pf6N2E2_980at 1148.053 kb on + strand, within Pf6N2E2_980at 1148.163 kb on + strand, within Pf6N2E2_980at 1148.163 kb on + strand, within Pf6N2E2_980at 1148.164 kb on - strand, within Pf6N2E2_980at 1148.212 kb on + strand, within Pf6N2E2_980at 1148.212 kb on + strand, within Pf6N2E2_980at 1148.217 kb on + strand, within Pf6N2E2_980at 1148.217 kb on + strand, within Pf6N2E2_980at 1148.218 kb on - strand, within Pf6N2E2_980at 1148.390 kb on - strand, within Pf6N2E2_980at 1148.463 kb on - strand, within Pf6N2E2_980at 1148.463 kb on - strand, within Pf6N2E2_980at 1148.465 kb on + strand, within Pf6N2E2_980at 1148.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 0.5 M
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1,146,575 + Pf6N2E2_978 0.45 -0.4
1,146,648 - Pf6N2E2_978 0.49 -0.8
1,146,836 + Pf6N2E2_978 0.61 -0.1
1,146,837 - Pf6N2E2_978 0.61 -0.5
1,146,872 + Pf6N2E2_978 0.63 -1.5
1,146,872 + Pf6N2E2_978 0.63 -0.6
1,147,203 + Pf6N2E2_978 0.84 +0.3
1,147,203 + Pf6N2E2_978 0.84 -0.8
1,147,204 - Pf6N2E2_978 0.84 +0.5
1,147,204 - Pf6N2E2_978 0.84 -0.1
1,147,281 + Pf6N2E2_978 0.89 +0.2
1,147,348 + -0.4
1,147,349 - -0.5
1,147,355 - +0.9
1,147,355 - -0.1
1,147,588 + Pf6N2E2_979 0.89 -1.3
1,147,659 + -2.5
1,147,659 + +0.3
1,147,660 - -0.4
1,147,660 - -1.4
1,147,743 + +0.9
1,147,743 + +0.5
1,147,791 + -0.8
1,147,791 + -0.1
1,147,951 + Pf6N2E2_980 0.23 +0.8
1,147,951 + Pf6N2E2_980 0.23 -1.4
1,147,951 + Pf6N2E2_980 0.23 +4.5
1,147,951 + Pf6N2E2_980 0.23 +2.2
1,147,952 - Pf6N2E2_980 0.23 +0.0
1,147,961 - Pf6N2E2_980 0.24 -0.5
1,148,053 + Pf6N2E2_980 0.35 +0.2
1,148,163 + Pf6N2E2_980 0.48 +0.9
1,148,163 + Pf6N2E2_980 0.48 +0.2
1,148,164 - Pf6N2E2_980 0.48 -1.1
1,148,212 + Pf6N2E2_980 0.54 -1.0
1,148,212 + Pf6N2E2_980 0.54 -0.8
1,148,217 + Pf6N2E2_980 0.54 +0.1
1,148,217 + Pf6N2E2_980 0.54 +1.5
1,148,218 - Pf6N2E2_980 0.54 +0.4
1,148,390 - Pf6N2E2_980 0.75 -1.4
1,148,463 - Pf6N2E2_980 0.84 +0.2
1,148,463 - Pf6N2E2_980 0.84 -1.5
1,148,465 + Pf6N2E2_980 0.84 -0.5
1,148,594 - -0.2

Or see this region's nucleotide sequence