Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_750

Experiment: Chloride 0.5 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_748 and Pf6N2E2_749 are separated by 1 nucleotidesPf6N2E2_749 and Pf6N2E2_750 are separated by 365 nucleotidesPf6N2E2_750 and Pf6N2E2_751 are separated by 51 nucleotidesPf6N2E2_751 and Pf6N2E2_752 are separated by 322 nucleotides Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005 _748 Pf6N2E2_749 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 859,007 to 859,477 _749 Pf6N2E2_750 - Transcriptional regulator, DeoR family, at 859,843 to 860,559 _750 Pf6N2E2_751 - Electron transfer flavoprotein, beta subunit, at 860,611 to 860,952 _751 Pf6N2E2_752 - Mobile element protein, at 861,275 to 862,543 _752 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1 2at 858.910 kb on + strand, within Pf6N2E2_748at 858.917 kb on - strandat 858.934 kb on + strandat 858.935 kb on - strandat 858.935 kb on - strandat 859.104 kb on + strand, within Pf6N2E2_749at 859.104 kb on + strand, within Pf6N2E2_749at 859.104 kb on + strand, within Pf6N2E2_749at 859.104 kb on + strand, within Pf6N2E2_749at 859.104 kb on + strand, within Pf6N2E2_749at 859.104 kb on + strand, within Pf6N2E2_749at 859.104 kb on + strand, within Pf6N2E2_749at 859.105 kb on - strand, within Pf6N2E2_749at 859.105 kb on - strand, within Pf6N2E2_749at 859.443 kb on - strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.754 kb on + strandat 859.755 kb on - strandat 859.755 kb on - strandat 859.755 kb on - strandat 859.755 kb on - strandat 859.755 kb on - strandat 859.755 kb on - strandat 859.755 kb on - strandat 859.755 kb on - strandat 859.807 kb on - strandat 859.807 kb on - strandat 859.851 kb on + strandat 860.017 kb on + strand, within Pf6N2E2_750at 860.017 kb on + strand, within Pf6N2E2_750at 860.017 kb on + strand, within Pf6N2E2_750at 860.018 kb on - strand, within Pf6N2E2_750at 860.018 kb on - strand, within Pf6N2E2_750at 860.231 kb on - strand, within Pf6N2E2_750at 860.573 kb on + strandat 860.573 kb on + strandat 860.573 kb on + strandat 860.573 kb on + strandat 860.574 kb on - strandat 860.574 kb on - strandat 860.574 kb on - strandat 860.574 kb on - strandat 860.574 kb on - strandat 860.574 kb on - strandat 860.574 kb on - strandat 860.720 kb on + strand, within Pf6N2E2_751at 860.720 kb on + strand, within Pf6N2E2_751at 860.720 kb on + strand, within Pf6N2E2_751at 860.721 kb on - strand, within Pf6N2E2_751at 860.721 kb on - strand, within Pf6N2E2_751at 860.896 kb on + strand, within Pf6N2E2_751at 860.897 kb on - strand, within Pf6N2E2_751at 860.940 kb on + strandat 860.950 kb on + strandat 860.951 kb on - strandat 860.951 kb on - strandat 860.951 kb on - strandat 860.968 kb on + strandat 860.968 kb on + strandat 860.969 kb on - strandat 860.969 kb on - strandat 860.979 kb on + strandat 860.979 kb on + strandat 860.979 kb on + strandat 860.979 kb on + strandat 860.979 kb on + strandat 860.979 kb on + strandat 860.980 kb on - strandat 860.980 kb on - strandat 860.980 kb on - strandat 860.980 kb on - strandat 860.980 kb on - strandat 860.980 kb on - strandat 860.998 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.019 kb on - strandat 861.023 kb on - strandat 861.023 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 0.5 M
remove
858,910 + Pf6N2E2_748 0.90 +1.0
858,917 - +0.6
858,934 + +0.5
858,935 - +0.2
858,935 - -1.2
859,104 + Pf6N2E2_749 0.21 +0.0
859,104 + Pf6N2E2_749 0.21 -1.5
859,104 + Pf6N2E2_749 0.21 +0.6
859,104 + Pf6N2E2_749 0.21 +0.2
859,104 + Pf6N2E2_749 0.21 +0.1
859,104 + Pf6N2E2_749 0.21 -0.9
859,104 + Pf6N2E2_749 0.21 +0.0
859,105 - Pf6N2E2_749 0.21 -0.4
859,105 - Pf6N2E2_749 0.21 -0.3
859,443 - -1.5
859,754 + -0.7
859,754 + +0.5
859,754 + -1.2
859,754 + +0.2
859,754 + +0.7
859,754 + -0.1
859,754 + +0.3
859,754 + -1.3
859,754 + -0.4
859,755 - -0.5
859,755 - -0.1
859,755 - -0.5
859,755 - -0.1
859,755 - +0.8
859,755 - -0.5
859,755 - -0.0
859,755 - +0.5
859,807 - +1.5
859,807 - +0.2
859,851 + +1.0
860,017 + Pf6N2E2_750 0.24 +0.4
860,017 + Pf6N2E2_750 0.24 -0.9
860,017 + Pf6N2E2_750 0.24 -0.2
860,018 - Pf6N2E2_750 0.24 +0.9
860,018 - Pf6N2E2_750 0.24 -2.1
860,231 - Pf6N2E2_750 0.54 -1.4
860,573 + -0.4
860,573 + -0.9
860,573 + -0.3
860,573 + -0.9
860,574 - +1.5
860,574 - +0.6
860,574 - -1.4
860,574 - -1.0
860,574 - +0.2
860,574 - -0.6
860,574 - +0.4
860,720 + Pf6N2E2_751 0.32 -0.3
860,720 + Pf6N2E2_751 0.32 -0.6
860,720 + Pf6N2E2_751 0.32 -0.1
860,721 - Pf6N2E2_751 0.32 -0.4
860,721 - Pf6N2E2_751 0.32 +0.5
860,896 + Pf6N2E2_751 0.83 +0.3
860,897 - Pf6N2E2_751 0.84 -0.1
860,940 + +2.5
860,950 + -0.4
860,951 - +1.0
860,951 - +1.7
860,951 - +0.1
860,968 + +1.3
860,968 + +1.5
860,969 - +1.3
860,969 - -0.9
860,979 + -1.0
860,979 + +0.1
860,979 + -0.7
860,979 + -0.5
860,979 + -1.9
860,979 + -2.4
860,980 - +0.6
860,980 - -0.3
860,980 - -0.5
860,980 - +0.7
860,980 - -0.4
860,980 - +0.5
860,998 - +0.1
861,019 - -0.1
861,019 - +0.7
861,019 - +1.5
861,019 - +0.3
861,019 - -0.2
861,019 - -0.5
861,019 - -0.7
861,019 - +0.7
861,019 - -1.9
861,019 - -0.1
861,019 - -0.1
861,019 - -0.5
861,019 - +0.1
861,023 - -0.7
861,023 - +0.6

Or see this region's nucleotide sequence