Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0819

Experiment: L-Glutamic (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0818 and Ga0059261_0819 are separated by 78 nucleotidesGa0059261_0819 and Ga0059261_0820 are separated by 403 nucleotides Ga0059261_0818: Ga0059261_0818 - OmpA family, at 860,222 to 861,109 _0818 Ga0059261_0819: Ga0059261_0819 - Holliday junction DNA helicase subunit RuvB, at 861,188 to 862,216 _0819 Ga0059261_0820: Ga0059261_0820 - Holliday junction DNA helicase subunit RuvA, at 862,620 to 863,219 _0820 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1at 860.336 kb on + strand, within Ga0059261_0818at 860.336 kb on + strand, within Ga0059261_0818at 860.337 kb on - strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.474 kb on + strand, within Ga0059261_0818at 860.723 kb on + strandat 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818at 861.174 kb on + strandat 861.189 kb on + strandat 862.218 kb on + strandat 862.305 kb on - strandat 862.305 kb on - strandat 862.316 kb on + strandat 862.316 kb on + strandat 862.317 kb on - strandat 862.317 kb on - strandat 862.317 kb on - strandat 862.317 kb on - strandat 862.365 kb on + strandat 862.366 kb on - strandat 862.366 kb on - strandat 862.440 kb on + strandat 862.448 kb on + strandat 862.449 kb on - strandat 862.449 kb on - strandat 862.449 kb on - strandat 862.449 kb on - strandat 862.483 kb on - strandat 862.483 kb on - strandat 862.498 kb on - strandat 862.498 kb on - strandat 862.498 kb on - strandat 862.926 kb on + strand, within Ga0059261_0820

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C); no added vitamins
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860,336 + Ga0059261_0818 0.13 +0.9
860,336 + Ga0059261_0818 0.13 +0.4
860,337 - Ga0059261_0818 0.13 -0.9
860,389 + Ga0059261_0818 0.19 +0.4
860,389 + Ga0059261_0818 0.19 +0.6
860,389 + Ga0059261_0818 0.19 +0.4
860,389 + Ga0059261_0818 0.19 +0.5
860,390 - Ga0059261_0818 0.19 -0.4
860,390 - Ga0059261_0818 0.19 +0.6
860,390 - Ga0059261_0818 0.19 -0.0
860,474 + Ga0059261_0818 0.28 +0.1
860,723 + -0.1
860,723 + Ga0059261_0818 0.56 +0.6
860,723 + Ga0059261_0818 0.56 +0.3
860,723 + Ga0059261_0818 0.56 +0.5
860,723 + Ga0059261_0818 0.56 -0.1
860,724 - Ga0059261_0818 0.57 -0.6
860,724 - Ga0059261_0818 0.57 -0.3
860,724 - Ga0059261_0818 0.57 +0.3
860,724 - Ga0059261_0818 0.57 +0.5
860,724 - Ga0059261_0818 0.57 +0.0
860,724 - Ga0059261_0818 0.57 +0.7
860,724 - Ga0059261_0818 0.57 +1.7
860,724 - Ga0059261_0818 0.57 -0.0
860,724 - Ga0059261_0818 0.57 -0.5
860,724 - Ga0059261_0818 0.57 -0.1
860,724 - Ga0059261_0818 0.57 +0.6
860,724 - Ga0059261_0818 0.57 -1.7
860,725 + Ga0059261_0818 0.57 -0.2
860,725 + Ga0059261_0818 0.57 +0.7
860,725 + Ga0059261_0818 0.57 +0.4
860,725 + Ga0059261_0818 0.57 -0.2
860,725 + Ga0059261_0818 0.57 -0.9
860,726 - Ga0059261_0818 0.57 +0.8
860,726 - Ga0059261_0818 0.57 +0.3
860,859 - Ga0059261_0818 0.72 +0.7
860,859 - Ga0059261_0818 0.72 +0.2
860,861 - Ga0059261_0818 0.72 -0.1
860,861 - Ga0059261_0818 0.72 +0.6
860,930 + Ga0059261_0818 0.80 +1.7
860,930 + Ga0059261_0818 0.80 +0.0
860,931 - Ga0059261_0818 0.80 -0.4
860,931 - Ga0059261_0818 0.80 -1.5
861,174 + +0.5
861,189 + +0.1
862,218 + +0.1
862,305 - -0.2
862,305 - -0.3
862,316 + -0.5
862,316 + -0.3
862,317 - +0.1
862,317 - +0.4
862,317 - +0.2
862,317 - +0.3
862,365 + -3.2
862,366 - +0.0
862,366 - +0.0
862,440 + -2.1
862,448 + -1.6
862,449 - -0.1
862,449 - +0.8
862,449 - -0.1
862,449 - -0.2
862,483 - +1.1
862,483 - +1.5
862,498 - +0.0
862,498 - -0.1
862,498 - -0.1
862,926 + Ga0059261_0820 0.51 -1.3

Or see this region's nucleotide sequence