Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0093

Experiment: L-Glutamic (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0091 and Ga0059261_0092 are separated by 135 nucleotidesGa0059261_0092 and Ga0059261_0093 overlap by 4 nucleotidesGa0059261_0093 and Ga0059261_0094 are separated by 94 nucleotidesGa0059261_0094 and Ga0059261_0095 are separated by 185 nucleotides Ga0059261_0091: Ga0059261_0091 - Outer membrane protein V, at 83,304 to 84,134 _0091 Ga0059261_0092: Ga0059261_0092 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 84,270 to 85,004 _0092 Ga0059261_0093: Ga0059261_0093 - Signal transduction histidine kinase, at 85,001 to 86,413 _0093 Ga0059261_0094: Ga0059261_0094 - Protease subunit of ATP-dependent Clp proteases, at 86,508 to 87,167 _0094 Ga0059261_0095: Ga0059261_0095 - Ribosomal protein L7/L12 C-terminal domain, at 87,353 to 87,511 _0095 Position (kb) 85 86 87Strain fitness (log2 ratio) -1 0 1 2at 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.227 kb on + strandat 84.228 kb on - strandat 84.228 kb on - strandat 84.258 kb on + strandat 84.258 kb on + strandat 84.259 kb on - strandat 84.259 kb on - strandat 84.293 kb on + strandat 84.293 kb on + strandat 84.294 kb on - strandat 84.342 kb on + strandat 84.342 kb on + strandat 84.342 kb on + strandat 84.343 kb on - strandat 84.343 kb on - strandat 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.618 kb on - strand, within Ga0059261_0092at 84.811 kb on + strand, within Ga0059261_0092at 84.811 kb on + strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.838 kb on - strand, within Ga0059261_0092at 84.838 kb on - strand, within Ga0059261_0092at 84.864 kb on - strand, within Ga0059261_0092at 84.963 kb on + strandat 84.963 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.967 kb on - strandat 84.967 kb on - strandat 84.967 kb on - strandat 85.229 kb on + strand, within Ga0059261_0093at 85.229 kb on + strand, within Ga0059261_0093at 85.229 kb on + strand, within Ga0059261_0093at 85.230 kb on - strand, within Ga0059261_0093at 85.246 kb on + strand, within Ga0059261_0093at 85.246 kb on + strand, within Ga0059261_0093at 85.246 kb on + strand, within Ga0059261_0093at 85.247 kb on - strand, within Ga0059261_0093at 85.247 kb on - strand, within Ga0059261_0093at 85.247 kb on - strand, within Ga0059261_0093at 85.307 kb on - strand, within Ga0059261_0093at 85.353 kb on + strand, within Ga0059261_0093at 85.354 kb on - strand, within Ga0059261_0093at 85.364 kb on - strand, within Ga0059261_0093at 85.364 kb on - strand, within Ga0059261_0093at 85.591 kb on + strand, within Ga0059261_0093at 85.636 kb on + strand, within Ga0059261_0093at 85.637 kb on - strand, within Ga0059261_0093at 85.796 kb on - strand, within Ga0059261_0093at 85.865 kb on + strand, within Ga0059261_0093at 85.865 kb on + strand, within Ga0059261_0093at 85.865 kb on + strand, within Ga0059261_0093at 85.866 kb on - strand, within Ga0059261_0093at 85.866 kb on - strand, within Ga0059261_0093at 85.866 kb on - strand, within Ga0059261_0093at 86.051 kb on + strand, within Ga0059261_0093at 86.051 kb on + strand, within Ga0059261_0093at 86.051 kb on + strand, within Ga0059261_0093at 86.051 kb on + strand, within Ga0059261_0093at 86.052 kb on - strand, within Ga0059261_0093at 86.052 kb on - strand, within Ga0059261_0093at 86.052 kb on - strandat 86.052 kb on - strand, within Ga0059261_0093at 86.052 kb on - strand, within Ga0059261_0093at 86.052 kb on - strand, within Ga0059261_0093at 86.052 kb on - strand, within Ga0059261_0093at 86.138 kb on + strand, within Ga0059261_0093at 86.138 kb on + strand, within Ga0059261_0093at 86.139 kb on - strandat 86.155 kb on + strand, within Ga0059261_0093at 86.155 kb on + strand, within Ga0059261_0093at 86.155 kb on + strand, within Ga0059261_0093at 86.155 kb on + strand, within Ga0059261_0093at 86.156 kb on - strand, within Ga0059261_0093at 86.156 kb on - strand, within Ga0059261_0093at 87.185 kb on + strandat 87.185 kb on + strandat 87.185 kb on + strandat 87.185 kb on + strandat 87.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C); no added vitamins
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84,171 + -0.1
84,171 + +0.2
84,171 + +1.1
84,171 + -0.3
84,171 + +0.7
84,171 + +0.4
84,171 + +0.1
84,172 - +0.1
84,172 - +0.3
84,172 - -1.0
84,172 - +0.2
84,172 - +0.5
84,172 - -0.3
84,227 + -0.4
84,228 - -0.2
84,228 - -1.0
84,258 + +0.4
84,258 + -0.4
84,259 - -0.2
84,259 - +0.8
84,293 + -0.1
84,293 + +0.0
84,294 - -0.0
84,342 + -0.7
84,342 + +0.8
84,342 + -0.6
84,343 - +0.3
84,343 - +0.3
84,576 + Ga0059261_0092 0.42 +0.3
84,576 + Ga0059261_0092 0.42 -0.3
84,576 + Ga0059261_0092 0.42 -0.4
84,576 + Ga0059261_0092 0.42 +0.3
84,576 + Ga0059261_0092 0.42 +0.4
84,576 + Ga0059261_0092 0.42 +0.0
84,576 + Ga0059261_0092 0.42 +0.7
84,576 + Ga0059261_0092 0.42 -0.8
84,577 - Ga0059261_0092 0.42 +0.2
84,577 - Ga0059261_0092 0.42 +0.9
84,577 - Ga0059261_0092 0.42 +1.7
84,577 - Ga0059261_0092 0.42 +1.3
84,577 - Ga0059261_0092 0.42 +0.0
84,577 - Ga0059261_0092 0.42 +0.2
84,618 - Ga0059261_0092 0.47 -0.1
84,811 + Ga0059261_0092 0.74 -0.3
84,811 + Ga0059261_0092 0.74 -0.3
84,812 - Ga0059261_0092 0.74 +0.1
84,812 - Ga0059261_0092 0.74 +0.1
84,812 - Ga0059261_0092 0.74 -0.2
84,812 - Ga0059261_0092 0.74 -0.1
84,837 + Ga0059261_0092 0.77 +0.1
84,837 + Ga0059261_0092 0.77 +0.1
84,837 + Ga0059261_0092 0.77 -0.2
84,837 + Ga0059261_0092 0.77 +0.8
84,837 + Ga0059261_0092 0.77 +0.7
84,838 - Ga0059261_0092 0.77 +0.4
84,838 - Ga0059261_0092 0.77 +0.7
84,864 - Ga0059261_0092 0.81 +1.2
84,963 + -0.5
84,963 + +0.2
84,966 + +0.1
84,966 + +0.3
84,966 + -0.2
84,966 + +0.7
84,966 + +0.0
84,966 + +0.2
84,966 + +0.1
84,967 - +0.4
84,967 - +1.8
84,967 - -0.1
85,229 + Ga0059261_0093 0.16 +0.0
85,229 + Ga0059261_0093 0.16 +0.5
85,229 + Ga0059261_0093 0.16 +0.7
85,230 - Ga0059261_0093 0.16 -0.9
85,246 + Ga0059261_0093 0.17 +0.8
85,246 + Ga0059261_0093 0.17 +0.4
85,246 + Ga0059261_0093 0.17 -0.1
85,247 - Ga0059261_0093 0.17 +1.0
85,247 - Ga0059261_0093 0.17 -0.1
85,247 - Ga0059261_0093 0.17 +0.4
85,307 - Ga0059261_0093 0.22 +0.7
85,353 + Ga0059261_0093 0.25 -0.6
85,354 - Ga0059261_0093 0.25 +1.3
85,364 - Ga0059261_0093 0.26 +0.2
85,364 - Ga0059261_0093 0.26 -1.2
85,591 + Ga0059261_0093 0.42 -0.1
85,636 + Ga0059261_0093 0.45 -0.3
85,637 - Ga0059261_0093 0.45 +0.4
85,796 - Ga0059261_0093 0.56 -0.6
85,865 + Ga0059261_0093 0.61 +0.5
85,865 + Ga0059261_0093 0.61 +0.0
85,865 + Ga0059261_0093 0.61 +0.7
85,866 - Ga0059261_0093 0.61 -0.1
85,866 - Ga0059261_0093 0.61 +0.7
85,866 - Ga0059261_0093 0.61 +0.6
86,051 + Ga0059261_0093 0.74 -0.8
86,051 + Ga0059261_0093 0.74 -0.5
86,051 + Ga0059261_0093 0.74 -0.2
86,051 + Ga0059261_0093 0.74 -0.9
86,052 - Ga0059261_0093 0.74 -0.3
86,052 - Ga0059261_0093 0.74 -0.2
86,052 - +0.5
86,052 - Ga0059261_0093 0.74 +0.7
86,052 - Ga0059261_0093 0.74 +0.0
86,052 - Ga0059261_0093 0.74 +0.7
86,052 - Ga0059261_0093 0.74 +0.0
86,138 + Ga0059261_0093 0.80 +0.0
86,138 + Ga0059261_0093 0.80 -1.3
86,139 - +1.7
86,155 + Ga0059261_0093 0.82 +0.3
86,155 + Ga0059261_0093 0.82 -0.7
86,155 + Ga0059261_0093 0.82 +0.0
86,155 + Ga0059261_0093 0.82 +0.6
86,156 - Ga0059261_0093 0.82 -0.7
86,156 - Ga0059261_0093 0.82 +0.1
87,185 + +0.1
87,185 + -0.3
87,185 + -0.8
87,185 + +0.0
87,186 - +0.4

Or see this region's nucleotide sequence