Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31385 and AZOBR_RS31390 are separated by 47 nucleotides AZOBR_RS31390 and AZOBR_RS31395 are separated by 48 nucleotides AZOBR_RS31395 and AZOBR_RS31400 are separated by 132 nucleotides
AZOBR_RS31385: AZOBR_RS31385 - GntR family transcriptional regulator, at 410,462 to 411,118
_RS31385
AZOBR_RS31390: AZOBR_RS31390 - 3-ketoacyl-ACP reductase, at 411,166 to 411,924
_RS31390
AZOBR_RS31395: AZOBR_RS31395 - cupin, at 411,973 to 412,308
_RS31395
AZOBR_RS31400: AZOBR_RS31400 - C4-dicarboxylate ABC transporter, at 412,441 to 413,430
_RS31400
Position (kb) 411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.174 kb on - strand at 410.490 kb on - strand at 410.490 kb on - strand at 411.634 kb on + strand, within AZOBR_RS31390 at 411.730 kb on + strand, within AZOBR_RS31390 at 411.958 kb on - strand at 412.210 kb on + strand, within AZOBR_RS31395 at 412.210 kb on + strand, within AZOBR_RS31395 at 412.210 kb on + strand, within AZOBR_RS31395 at 412.211 kb on - strand, within AZOBR_RS31395 at 412.211 kb on - strand, within AZOBR_RS31395 at 412.211 kb on - strand, within AZOBR_RS31395 at 412.417 kb on + strand at 412.418 kb on - strand at 412.418 kb on - strand at 412.440 kb on + strand at 412.440 kb on + strand at 412.441 kb on - strand at 412.441 kb on - strand at 412.441 kb on - strand at 412.441 kb on - strand at 412.441 kb on - strand at 412.561 kb on + strand, within AZOBR_RS31400 at 412.585 kb on + strand, within AZOBR_RS31400 at 412.585 kb on + strand, within AZOBR_RS31400 at 412.586 kb on - strand, within AZOBR_RS31400 at 412.586 kb on - strand, within AZOBR_RS31400 at 412.639 kb on + strand, within AZOBR_RS31400 at 412.876 kb on + strand, within AZOBR_RS31400 at 412.876 kb on + strand, within AZOBR_RS31400 at 412.877 kb on - strand, within AZOBR_RS31400 at 412.900 kb on + strand, within AZOBR_RS31400 at 412.901 kb on - strand, within AZOBR_RS31400 at 412.901 kb on - strand, within AZOBR_RS31400 at 412.901 kb on - strand, within AZOBR_RS31400 at 412.918 kb on + strand, within AZOBR_RS31400 at 412.919 kb on - strand, within AZOBR_RS31400
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 410,174 - +1.3 410,490 - +0.6 410,490 - +0.7 411,634 + AZOBR_RS31390 0.62 +0.8 411,730 + AZOBR_RS31390 0.74 +0.9 411,958 - -3.3 412,210 + AZOBR_RS31395 0.71 -0.3 412,210 + AZOBR_RS31395 0.71 -3.5 412,210 + AZOBR_RS31395 0.71 -0.3 412,211 - AZOBR_RS31395 0.71 -0.0 412,211 - AZOBR_RS31395 0.71 -0.4 412,211 - AZOBR_RS31395 0.71 +0.8 412,417 + -1.3 412,418 - +0.0 412,418 - -0.4 412,440 + -0.6 412,440 + -1.5 412,441 - +0.1 412,441 - -2.2 412,441 - -0.0 412,441 - +0.3 412,441 - +0.4 412,561 + AZOBR_RS31400 0.12 -2.4 412,585 + AZOBR_RS31400 0.15 -1.2 412,585 + AZOBR_RS31400 0.15 -0.2 412,586 - AZOBR_RS31400 0.15 +1.2 412,586 - AZOBR_RS31400 0.15 -1.5 412,639 + AZOBR_RS31400 0.20 -0.4 412,876 + AZOBR_RS31400 0.44 -0.9 412,876 + AZOBR_RS31400 0.44 -0.1 412,877 - AZOBR_RS31400 0.44 -0.4 412,900 + AZOBR_RS31400 0.46 +1.4 412,901 - AZOBR_RS31400 0.46 +0.4 412,901 - AZOBR_RS31400 0.46 +0.8 412,901 - AZOBR_RS31400 0.46 +2.3 412,918 + AZOBR_RS31400 0.48 +1.2 412,919 - AZOBR_RS31400 0.48 +0.3
Or see this region's nucleotide sequence