Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29985 and AZOBR_RS29990 are separated by 303 nucleotides AZOBR_RS29990 and AZOBR_RS29995 are separated by 28 nucleotides AZOBR_RS29995 and AZOBR_RS30000 are separated by 99 nucleotides
AZOBR_RS29985: AZOBR_RS29985 - pyruvate oxidase, at 67,441 to 69,195
_RS29985
AZOBR_RS29990: AZOBR_RS29990 - putative dioxygenase subunit, at 69,499 to 70,425
_RS29990
AZOBR_RS29995: AZOBR_RS29995 - PAS sensor protein, at 70,454 to 70,879
_RS29995
AZOBR_RS30000: AZOBR_RS30000 - exported protein of unknown function, at 70,979 to 71,308
_RS30000
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 68.814 kb on - strand, within AZOBR_RS29985 at 68.864 kb on + strand, within AZOBR_RS29985 at 68.864 kb on + strand, within AZOBR_RS29985 at 68.865 kb on - strand, within AZOBR_RS29985 at 68.865 kb on - strand, within AZOBR_RS29985 at 68.865 kb on - strand, within AZOBR_RS29985 at 68.865 kb on - strand, within AZOBR_RS29985 at 68.886 kb on - strand, within AZOBR_RS29985 at 68.886 kb on - strand, within AZOBR_RS29985 at 68.936 kb on + strand, within AZOBR_RS29985 at 68.937 kb on - strand, within AZOBR_RS29985 at 68.937 kb on - strand, within AZOBR_RS29985 at 69.335 kb on - strand at 69.458 kb on + strand at 69.459 kb on - strand at 69.459 kb on - strand at 69.514 kb on - strand at 69.514 kb on - strand at 69.638 kb on - strand, within AZOBR_RS29990 at 69.892 kb on + strand, within AZOBR_RS29990 at 69.892 kb on + strand, within AZOBR_RS29990 at 69.892 kb on + strand, within AZOBR_RS29990 at 69.893 kb on - strand, within AZOBR_RS29990 at 70.040 kb on - strand, within AZOBR_RS29990 at 70.658 kb on + strand, within AZOBR_RS29995 at 70.659 kb on - strand, within AZOBR_RS29995 at 70.659 kb on - strand, within AZOBR_RS29995 at 70.947 kb on + strand at 70.947 kb on + strand at 71.178 kb on - strand, within AZOBR_RS30000 at 71.180 kb on - strand, within AZOBR_RS30000 at 71.192 kb on + strand, within AZOBR_RS30000 at 71.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 68,814 - AZOBR_RS29985 0.78 +0.2 68,864 + AZOBR_RS29985 0.81 -0.7 68,864 + AZOBR_RS29985 0.81 +0.9 68,865 - AZOBR_RS29985 0.81 +0.8 68,865 - AZOBR_RS29985 0.81 -0.6 68,865 - AZOBR_RS29985 0.81 -1.9 68,865 - AZOBR_RS29985 0.81 +0.0 68,886 - AZOBR_RS29985 0.82 -0.1 68,886 - AZOBR_RS29985 0.82 -0.6 68,936 + AZOBR_RS29985 0.85 -3.0 68,937 - AZOBR_RS29985 0.85 +1.0 68,937 - AZOBR_RS29985 0.85 +1.1 69,335 - -0.1 69,458 + +0.0 69,459 - -0.6 69,459 - +0.7 69,514 - -3.0 69,514 - +0.7 69,638 - AZOBR_RS29990 0.15 +0.1 69,892 + AZOBR_RS29990 0.42 -0.5 69,892 + AZOBR_RS29990 0.42 +0.3 69,892 + AZOBR_RS29990 0.42 -0.6 69,893 - AZOBR_RS29990 0.43 +2.3 70,040 - AZOBR_RS29990 0.58 -1.5 70,658 + AZOBR_RS29995 0.48 -0.5 70,659 - AZOBR_RS29995 0.48 -0.2 70,659 - AZOBR_RS29995 0.48 +0.6 70,947 + -0.0 70,947 + +0.1 71,178 - AZOBR_RS30000 0.60 -0.7 71,180 - AZOBR_RS30000 0.61 -0.5 71,192 + AZOBR_RS30000 0.65 -0.1 71,408 - -2.7
Or see this region's nucleotide sequence