Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29965 and AZOBR_RS29970 are separated by 114 nucleotides AZOBR_RS29970 and AZOBR_RS29975 are separated by 30 nucleotides AZOBR_RS29975 and AZOBR_RS29980 are separated by 132 nucleotides
AZOBR_RS29965: AZOBR_RS29965 - flagellar biosynthesis protein, at 63,937 to 65,037
_RS29965
AZOBR_RS29970: AZOBR_RS29970 - hypothetical protein, at 65,152 to 65,691
_RS29970
AZOBR_RS29975: AZOBR_RS29975 - AsnC family transcriptional regulator, at 65,722 to 66,150
_RS29975
AZOBR_RS29980: AZOBR_RS29980 - saccharopine dehydrogenase, at 66,283 to 67,410
_RS29980
Position (kb) 65
66
67 Strain fitness (log2 ratio) -2
-1
0
1
2 at 64.783 kb on + strand, within AZOBR_RS29965 at 64.783 kb on + strand, within AZOBR_RS29965 at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.984 kb on + strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 64.985 kb on - strand at 65.085 kb on + strand at 65.085 kb on + strand at 65.086 kb on - strand at 65.182 kb on + strand at 65.183 kb on - strand at 65.183 kb on - strand at 65.183 kb on - strand at 65.362 kb on + strand, within AZOBR_RS29970 at 65.363 kb on - strand, within AZOBR_RS29970 at 65.401 kb on + strand, within AZOBR_RS29970 at 65.401 kb on + strand, within AZOBR_RS29970 at 66.766 kb on + strand, within AZOBR_RS29980 at 66.766 kb on + strand, within AZOBR_RS29980 at 66.766 kb on + strand, within AZOBR_RS29980 at 66.767 kb on - strand, within AZOBR_RS29980 at 66.898 kb on + strand, within AZOBR_RS29980
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 64,783 + AZOBR_RS29965 0.77 +0.3 64,783 + AZOBR_RS29965 0.77 -0.5 64,984 + +0.4 64,984 + +0.1 64,984 + -0.0 64,984 + -0.6 64,984 + +0.4 64,984 + +0.3 64,984 + +0.4 64,984 + +2.3 64,984 + +0.8 64,984 + -1.8 64,985 - -0.4 64,985 - -0.8 64,985 - -0.4 64,985 - +0.1 64,985 - +0.4 64,985 - +1.7 64,985 - +0.9 64,985 - -0.8 64,985 - +0.1 64,985 - -0.1 64,985 - -1.7 64,985 - -1.1 64,985 - +0.1 64,985 - -1.0 64,985 - +0.5 65,085 + -0.6 65,085 + +0.5 65,086 - -0.7 65,182 + -0.2 65,183 - -1.7 65,183 - -0.4 65,183 - +0.7 65,362 + AZOBR_RS29970 0.39 -1.0 65,363 - AZOBR_RS29970 0.39 -1.9 65,401 + AZOBR_RS29970 0.46 -0.0 65,401 + AZOBR_RS29970 0.46 -0.1 66,766 + AZOBR_RS29980 0.43 -1.4 66,766 + AZOBR_RS29980 0.43 -0.3 66,766 + AZOBR_RS29980 0.43 -2.3 66,767 - AZOBR_RS29980 0.43 -1.2 66,898 + AZOBR_RS29980 0.55 +0.0
Or see this region's nucleotide sequence