Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27815 and AZOBR_RS27820 are separated by 26 nucleotides AZOBR_RS27820 and AZOBR_RS27825 are separated by 252 nucleotides AZOBR_RS27825 and AZOBR_RS27830 are separated by 128 nucleotides
AZOBR_RS27815: AZOBR_RS27815 - isopropylmalate isomerase, at 409,781 to 411,196
_RS27815
AZOBR_RS27820: AZOBR_RS27820 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 411,223 to 412,095
_RS27820
AZOBR_RS27825: AZOBR_RS27825 - hypothetical protein, at 412,348 to 412,959
_RS27825
AZOBR_RS27830: AZOBR_RS27830 - proline racemase, at 413,088 to 414,101
_RS27830
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 410.466 kb on + strand, within AZOBR_RS27815 at 410.467 kb on - strand, within AZOBR_RS27815 at 410.595 kb on + strand, within AZOBR_RS27815 at 410.618 kb on + strand, within AZOBR_RS27815 at 410.618 kb on + strand, within AZOBR_RS27815 at 410.618 kb on + strand, within AZOBR_RS27815 at 411.069 kb on + strand at 411.240 kb on - strand at 411.258 kb on - strand at 411.258 kb on - strand at 411.260 kb on + strand at 411.261 kb on - strand at 411.791 kb on + strand, within AZOBR_RS27820 at 411.831 kb on - strand, within AZOBR_RS27820 at 412.142 kb on - strand at 412.203 kb on - strand at 412.811 kb on - strand, within AZOBR_RS27825 at 413.064 kb on + strand at 413.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 410,466 + AZOBR_RS27815 0.48 -0.2 410,467 - AZOBR_RS27815 0.48 +0.7 410,595 + AZOBR_RS27815 0.57 +0.7 410,618 + AZOBR_RS27815 0.59 -0.5 410,618 + AZOBR_RS27815 0.59 +0.2 410,618 + AZOBR_RS27815 0.59 +0.3 411,069 + +0.0 411,240 - -1.3 411,258 - +1.1 411,258 - -1.5 411,260 + +0.5 411,261 - +0.0 411,791 + AZOBR_RS27820 0.65 -0.3 411,831 - AZOBR_RS27820 0.70 -2.3 412,142 - +0.0 412,203 - +0.7 412,811 - AZOBR_RS27825 0.76 -1.4 413,064 + -0.9 413,078 + +0.7
Or see this region's nucleotide sequence