Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27080 and AZOBR_RS27085 are separated by 184 nucleotides
AZOBR_RS27080: AZOBR_RS27080 - transcriptional regulator, at 222,431 to 223,336
_RS27080
AZOBR_RS27085: AZOBR_RS27085 - branched-chain amino acid ABC transporter substrate-binding protein, at 223,521 to 224,531
_RS27085
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.591 kb on + strand, within AZOBR_RS27080 at 222.592 kb on - strand, within AZOBR_RS27080 at 222.592 kb on - strand, within AZOBR_RS27080 at 222.729 kb on + strand, within AZOBR_RS27080 at 222.729 kb on + strand, within AZOBR_RS27080 at 222.730 kb on - strand, within AZOBR_RS27080 at 223.213 kb on - strand, within AZOBR_RS27080 at 223.373 kb on - strand at 223.512 kb on + strand at 223.575 kb on + strand at 223.575 kb on + strand at 223.576 kb on - strand at 223.576 kb on - strand at 223.576 kb on - strand at 223.666 kb on - strand, within AZOBR_RS27085 at 223.666 kb on - strand, within AZOBR_RS27085 at 223.762 kb on - strand, within AZOBR_RS27085 at 223.762 kb on - strand, within AZOBR_RS27085 at 223.824 kb on + strand, within AZOBR_RS27085 at 223.824 kb on + strand, within AZOBR_RS27085 at 223.891 kb on - strand, within AZOBR_RS27085 at 223.891 kb on - strand, within AZOBR_RS27085 at 224.001 kb on + strand, within AZOBR_RS27085 at 224.001 kb on + strand, within AZOBR_RS27085 at 224.002 kb on - strand, within AZOBR_RS27085 at 224.002 kb on - strand, within AZOBR_RS27085 at 224.605 kb on + strand at 224.605 kb on + strand at 224.606 kb on - strand at 224.848 kb on + strand at 224.848 kb on + strand at 225.262 kb on + strand at 225.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 222,591 + AZOBR_RS27080 0.18 -0.5 222,592 - AZOBR_RS27080 0.18 -0.2 222,592 - AZOBR_RS27080 0.18 -1.2 222,729 + AZOBR_RS27080 0.33 +0.2 222,729 + AZOBR_RS27080 0.33 +1.0 222,730 - AZOBR_RS27080 0.33 +2.3 223,213 - AZOBR_RS27080 0.86 +0.3 223,373 - +0.7 223,512 + -0.3 223,575 + -0.5 223,575 + +0.6 223,576 - +1.2 223,576 - -0.4 223,576 - -0.8 223,666 - AZOBR_RS27085 0.14 -0.2 223,666 - AZOBR_RS27085 0.14 +0.4 223,762 - AZOBR_RS27085 0.24 +1.0 223,762 - AZOBR_RS27085 0.24 +0.6 223,824 + AZOBR_RS27085 0.30 -0.6 223,824 + AZOBR_RS27085 0.30 +0.2 223,891 - AZOBR_RS27085 0.37 +0.4 223,891 - AZOBR_RS27085 0.37 +0.3 224,001 + AZOBR_RS27085 0.47 -1.9 224,001 + AZOBR_RS27085 0.47 +0.4 224,002 - AZOBR_RS27085 0.48 -0.6 224,002 - AZOBR_RS27085 0.48 +1.4 224,605 + +0.1 224,605 + +0.3 224,606 - -0.4 224,848 + -0.4 224,848 + +1.3 225,262 + +0.5 225,262 + -1.6
Or see this region's nucleotide sequence