Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26455 and AZOBR_RS26460 are separated by 34 nucleotides AZOBR_RS26460 and AZOBR_RS26465 are separated by 95 nucleotides AZOBR_RS26465 and AZOBR_RS26470 are separated by 98 nucleotides
AZOBR_RS26455: AZOBR_RS26455 - LysR family transcriptional regulator, at 80,524 to 81,462
_RS26455
AZOBR_RS26460: AZOBR_RS26460 - hypothetical protein, at 81,497 to 82,126
_RS26460
AZOBR_RS26465: AZOBR_RS26465 - MmgE/PrpD family protein 4, at 82,222 to 83,481
_RS26465
AZOBR_RS26470: AZOBR_RS26470 - acyl-CoA synthetase, at 83,580 to 85,094
_RS26470
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 81.499 kb on - strand at 81.643 kb on - strand at 81.801 kb on + strand, within AZOBR_RS26460 at 81.802 kb on - strand, within AZOBR_RS26460 at 81.802 kb on - strand, within AZOBR_RS26460 at 81.960 kb on + strand, within AZOBR_RS26460 at 81.961 kb on - strand at 81.961 kb on - strand, within AZOBR_RS26460 at 81.967 kb on - strand, within AZOBR_RS26460 at 81.967 kb on - strand, within AZOBR_RS26460 at 82.024 kb on + strand, within AZOBR_RS26460 at 82.026 kb on + strand, within AZOBR_RS26460 at 82.298 kb on + strand at 82.299 kb on - strand at 82.389 kb on + strand, within AZOBR_RS26465 at 82.390 kb on - strand, within AZOBR_RS26465 at 82.390 kb on - strand, within AZOBR_RS26465 at 84.218 kb on - strand, within AZOBR_RS26470 at 84.218 kb on - strand, within AZOBR_RS26470 at 84.313 kb on + strand, within AZOBR_RS26470
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 81,499 - +2.4 81,643 - +0.4 81,801 + AZOBR_RS26460 0.48 +2.8 81,802 - AZOBR_RS26460 0.48 -0.2 81,802 - AZOBR_RS26460 0.48 -0.3 81,960 + AZOBR_RS26460 0.73 +0.9 81,961 - +0.7 81,961 - AZOBR_RS26460 0.74 -1.1 81,967 - AZOBR_RS26460 0.75 +0.7 81,967 - AZOBR_RS26460 0.75 -0.3 82,024 + AZOBR_RS26460 0.84 -2.0 82,026 + AZOBR_RS26460 0.84 -1.4 82,298 + +0.4 82,299 - -0.1 82,389 + AZOBR_RS26465 0.13 +0.4 82,390 - AZOBR_RS26465 0.13 -1.3 82,390 - AZOBR_RS26465 0.13 -0.1 84,218 - AZOBR_RS26470 0.42 -1.7 84,218 - AZOBR_RS26470 0.42 -0.7 84,313 + AZOBR_RS26470 0.48 -0.8
Or see this region's nucleotide sequence