Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26430 and AZOBR_RS26435 are separated by 220 nucleotides AZOBR_RS26435 and AZOBR_RS26440 are separated by 159 nucleotides
AZOBR_RS26430: AZOBR_RS26430 - ABC transporter permease, at 74,384 to 76,273
_RS26430
AZOBR_RS26435: AZOBR_RS26435 - ABC transporter substrate-binding protein, at 76,494 to 77,510
_RS26435
AZOBR_RS26440: AZOBR_RS26440 - transketolase, at 77,670 to 78,680
_RS26440
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 75.651 kb on + strand, within AZOBR_RS26430 at 75.652 kb on - strand, within AZOBR_RS26430 at 76.095 kb on + strand at 76.546 kb on + strand at 76.546 kb on + strand at 76.547 kb on - strand at 76.828 kb on + strand, within AZOBR_RS26435 at 77.153 kb on - strand, within AZOBR_RS26435 at 77.153 kb on - strand, within AZOBR_RS26435 at 77.153 kb on - strand, within AZOBR_RS26435 at 77.401 kb on + strand, within AZOBR_RS26435 at 77.401 kb on + strand, within AZOBR_RS26435 at 77.402 kb on - strand, within AZOBR_RS26435 at 77.402 kb on - strand, within AZOBR_RS26435 at 77.584 kb on + strand at 77.671 kb on + strand at 77.672 kb on - strand at 77.672 kb on - strand at 77.720 kb on - strand at 78.083 kb on - strand, within AZOBR_RS26440 at 78.088 kb on + strand, within AZOBR_RS26440 at 78.134 kb on - strand, within AZOBR_RS26440 at 78.134 kb on - strand, within AZOBR_RS26440 at 78.268 kb on + strand, within AZOBR_RS26440 at 78.350 kb on - strand, within AZOBR_RS26440 at 78.350 kb on - strand, within AZOBR_RS26440 at 78.377 kb on - strand, within AZOBR_RS26440 at 78.460 kb on + strand, within AZOBR_RS26440 at 78.505 kb on + strand, within AZOBR_RS26440 at 78.506 kb on - strand, within AZOBR_RS26440 at 78.506 kb on - strand, within AZOBR_RS26440
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 75,651 + AZOBR_RS26430 0.67 -2.8 75,652 - AZOBR_RS26430 0.67 +1.0 76,095 + -0.7 76,546 + -2.0 76,546 + +0.3 76,547 - +0.1 76,828 + AZOBR_RS26435 0.33 +0.2 77,153 - AZOBR_RS26435 0.65 +0.8 77,153 - AZOBR_RS26435 0.65 -0.9 77,153 - AZOBR_RS26435 0.65 +0.9 77,401 + AZOBR_RS26435 0.89 -0.5 77,401 + AZOBR_RS26435 0.89 +0.8 77,402 - AZOBR_RS26435 0.89 -1.4 77,402 - AZOBR_RS26435 0.89 +0.4 77,584 + +0.1 77,671 + -0.4 77,672 - +0.3 77,672 - -2.3 77,720 - +0.2 78,083 - AZOBR_RS26440 0.41 +0.1 78,088 + AZOBR_RS26440 0.41 +1.0 78,134 - AZOBR_RS26440 0.46 +1.0 78,134 - AZOBR_RS26440 0.46 +0.5 78,268 + AZOBR_RS26440 0.59 -0.4 78,350 - AZOBR_RS26440 0.67 +0.5 78,350 - AZOBR_RS26440 0.67 +0.8 78,377 - AZOBR_RS26440 0.70 -1.5 78,460 + AZOBR_RS26440 0.78 +0.2 78,505 + AZOBR_RS26440 0.83 +0.0 78,506 - AZOBR_RS26440 0.83 +1.1 78,506 - AZOBR_RS26440 0.83 -0.1
Or see this region's nucleotide sequence