Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23975

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23965 and AZOBR_RS23970 are separated by 10 nucleotidesAZOBR_RS23970 and AZOBR_RS23975 are separated by 86 nucleotidesAZOBR_RS23975 and AZOBR_RS23980 overlap by 4 nucleotidesAZOBR_RS23980 and AZOBR_RS23985 are separated by 171 nucleotides AZOBR_RS23965: AZOBR_RS23965 - potassium-transporting ATPase subunit B, at 406,551 to 408,680 _RS23965 AZOBR_RS23970: AZOBR_RS23970 - ATPase, at 408,691 to 409,299 _RS23970 AZOBR_RS23975: AZOBR_RS23975 - histidine kinase, at 409,386 to 412,145 _RS23975 AZOBR_RS23980: AZOBR_RS23980 - Fis family transcriptional regulator, at 412,142 to 412,840 _RS23980 AZOBR_RS23985: AZOBR_RS23985 - membrane protein, at 413,012 to 413,665 _RS23985 Position (kb) 409 410 411 412 413Strain fitness (log2 ratio) -2 -1 0 1 2at 408.390 kb on + strand, within AZOBR_RS23965at 408.391 kb on - strand, within AZOBR_RS23965at 408.391 kb on - strand, within AZOBR_RS23965at 408.427 kb on - strand, within AZOBR_RS23965at 408.427 kb on - strand, within AZOBR_RS23965at 408.600 kb on + strandat 408.601 kb on - strandat 408.601 kb on - strandat 408.883 kb on + strand, within AZOBR_RS23970at 408.884 kb on - strand, within AZOBR_RS23970at 408.955 kb on + strand, within AZOBR_RS23970at 409.297 kb on + strandat 409.512 kb on + strandat 409.650 kb on + strandat 409.650 kb on + strandat 409.651 kb on - strandat 409.651 kb on - strandat 409.770 kb on + strand, within AZOBR_RS23975at 409.770 kb on + strand, within AZOBR_RS23975at 409.771 kb on - strand, within AZOBR_RS23975at 409.812 kb on + strand, within AZOBR_RS23975at 409.813 kb on - strand, within AZOBR_RS23975at 409.986 kb on + strand, within AZOBR_RS23975at 409.986 kb on + strand, within AZOBR_RS23975at 409.987 kb on - strand, within AZOBR_RS23975at 410.022 kb on + strand, within AZOBR_RS23975at 410.022 kb on + strand, within AZOBR_RS23975at 410.022 kb on + strand, within AZOBR_RS23975at 410.022 kb on + strand, within AZOBR_RS23975at 410.022 kb on + strand, within AZOBR_RS23975at 410.023 kb on - strand, within AZOBR_RS23975at 410.023 kb on - strand, within AZOBR_RS23975at 410.023 kb on - strand, within AZOBR_RS23975at 410.023 kb on - strand, within AZOBR_RS23975at 410.388 kb on + strand, within AZOBR_RS23975at 410.799 kb on + strand, within AZOBR_RS23975at 410.800 kb on - strand, within AZOBR_RS23975at 410.800 kb on - strand, within AZOBR_RS23975at 411.925 kb on - strandat 411.925 kb on - strandat 412.236 kb on - strand, within AZOBR_RS23980at 412.454 kb on + strand, within AZOBR_RS23980at 412.454 kb on + strand, within AZOBR_RS23980at 412.454 kb on + strand, within AZOBR_RS23980at 412.454 kb on + strand, within AZOBR_RS23980at 412.455 kb on - strand, within AZOBR_RS23980at 412.455 kb on - strand, within AZOBR_RS23980at 412.455 kb on - strand, within AZOBR_RS23980at 412.455 kb on - strand, within AZOBR_RS23980at 412.455 kb on - strand, within AZOBR_RS23980at 412.632 kb on - strand, within AZOBR_RS23980at 412.632 kb on - strand, within AZOBR_RS23980at 412.632 kb on - strand, within AZOBR_RS23980at 412.728 kb on - strand, within AZOBR_RS23980at 412.728 kb on - strand, within AZOBR_RS23980at 412.739 kb on + strand, within AZOBR_RS23980at 412.739 kb on + strand, within AZOBR_RS23980at 412.740 kb on - strand, within AZOBR_RS23980at 412.740 kb on - strand, within AZOBR_RS23980at 412.740 kb on - strand, within AZOBR_RS23980at 412.740 kb on - strand, within AZOBR_RS23980at 412.740 kb on - strand, within AZOBR_RS23980at 413.009 kb on + strandat 413.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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408,390 + AZOBR_RS23965 0.86 -0.3
408,391 - AZOBR_RS23965 0.86 -0.0
408,391 - AZOBR_RS23965 0.86 +0.4
408,427 - AZOBR_RS23965 0.88 -1.3
408,427 - AZOBR_RS23965 0.88 -0.5
408,600 + -0.5
408,601 - +1.4
408,601 - +0.3
408,883 + AZOBR_RS23970 0.32 +0.0
408,884 - AZOBR_RS23970 0.32 +1.0
408,955 + AZOBR_RS23970 0.43 +2.3
409,297 + -2.5
409,512 + +0.5
409,650 + +0.2
409,650 + -1.3
409,651 - -1.8
409,651 - -1.4
409,770 + AZOBR_RS23975 0.14 -0.4
409,770 + AZOBR_RS23975 0.14 +0.3
409,771 - AZOBR_RS23975 0.14 +2.3
409,812 + AZOBR_RS23975 0.15 +1.0
409,813 - AZOBR_RS23975 0.15 +2.3
409,986 + AZOBR_RS23975 0.22 -2.2
409,986 + AZOBR_RS23975 0.22 +0.0
409,987 - AZOBR_RS23975 0.22 -0.2
410,022 + AZOBR_RS23975 0.23 -0.7
410,022 + AZOBR_RS23975 0.23 +1.4
410,022 + AZOBR_RS23975 0.23 -0.2
410,022 + AZOBR_RS23975 0.23 +0.3
410,022 + AZOBR_RS23975 0.23 -0.2
410,023 - AZOBR_RS23975 0.23 +0.7
410,023 - AZOBR_RS23975 0.23 -0.8
410,023 - AZOBR_RS23975 0.23 +1.3
410,023 - AZOBR_RS23975 0.23 +0.4
410,388 + AZOBR_RS23975 0.36 -1.7
410,799 + AZOBR_RS23975 0.51 +0.0
410,800 - AZOBR_RS23975 0.51 -0.2
410,800 - AZOBR_RS23975 0.51 +0.4
411,925 - -1.8
411,925 - +1.4
412,236 - AZOBR_RS23980 0.13 -0.1
412,454 + AZOBR_RS23980 0.45 +0.2
412,454 + AZOBR_RS23980 0.45 +0.9
412,454 + AZOBR_RS23980 0.45 +0.2
412,454 + AZOBR_RS23980 0.45 +0.3
412,455 - AZOBR_RS23980 0.45 -0.6
412,455 - AZOBR_RS23980 0.45 -1.4
412,455 - AZOBR_RS23980 0.45 -1.5
412,455 - AZOBR_RS23980 0.45 -0.7
412,455 - AZOBR_RS23980 0.45 -1.3
412,632 - AZOBR_RS23980 0.70 +1.2
412,632 - AZOBR_RS23980 0.70 +1.0
412,632 - AZOBR_RS23980 0.70 -0.1
412,728 - AZOBR_RS23980 0.84 -0.5
412,728 - AZOBR_RS23980 0.84 +0.1
412,739 + AZOBR_RS23980 0.85 +0.7
412,739 + AZOBR_RS23980 0.85 +1.0
412,740 - AZOBR_RS23980 0.86 -0.4
412,740 - AZOBR_RS23980 0.86 -0.1
412,740 - AZOBR_RS23980 0.86 +1.3
412,740 - AZOBR_RS23980 0.86 -0.2
412,740 - AZOBR_RS23980 0.86 -0.2
413,009 + -1.5
413,012 - +2.3

Or see this region's nucleotide sequence