Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23575 and AZOBR_RS23580 are separated by 221 nucleotides AZOBR_RS23580 and AZOBR_RS23585 are separated by 91 nucleotides AZOBR_RS23585 and AZOBR_RS23590 overlap by 11 nucleotides
AZOBR_RS23575: AZOBR_RS23575 - ABC transporter, at 320,464 to 321,519
_RS23575
AZOBR_RS23580: AZOBR_RS23580 - membrane protein, at 321,741 to 322,877
_RS23580
AZOBR_RS23585: AZOBR_RS23585 - hypothetical protein, at 322,969 to 323,829
_RS23585
AZOBR_RS23590: AZOBR_RS23590 - chromosome partitioning protein, at 323,819 to 324,853
_RS23590
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.941 kb on + strand, within AZOBR_RS23575 at 320.941 kb on + strand, within AZOBR_RS23575 at 320.941 kb on + strand, within AZOBR_RS23575 at 320.941 kb on + strand, within AZOBR_RS23575 at 320.942 kb on - strand, within AZOBR_RS23575 at 321.365 kb on - strand, within AZOBR_RS23575 at 321.365 kb on - strand, within AZOBR_RS23575 at 321.649 kb on + strand at 322.192 kb on - strand, within AZOBR_RS23580 at 322.211 kb on + strand, within AZOBR_RS23580 at 322.212 kb on - strand, within AZOBR_RS23580 at 323.418 kb on - strand, within AZOBR_RS23585 at 323.510 kb on + strand, within AZOBR_RS23585 at 323.510 kb on + strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.511 kb on - strand, within AZOBR_RS23585 at 323.821 kb on - strand at 323.855 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 320,941 + AZOBR_RS23575 0.45 +0.0 320,941 + AZOBR_RS23575 0.45 -3.5 320,941 + AZOBR_RS23575 0.45 +0.3 320,941 + AZOBR_RS23575 0.45 +0.3 320,942 - AZOBR_RS23575 0.45 -1.4 321,365 - AZOBR_RS23575 0.85 -0.4 321,365 - AZOBR_RS23575 0.85 -0.6 321,649 + +2.0 322,192 - AZOBR_RS23580 0.40 -0.5 322,211 + AZOBR_RS23580 0.41 -2.2 322,212 - AZOBR_RS23580 0.41 -1.6 323,418 - AZOBR_RS23585 0.52 -0.3 323,510 + AZOBR_RS23585 0.63 +0.7 323,510 + AZOBR_RS23585 0.63 +0.2 323,511 - AZOBR_RS23585 0.63 -1.8 323,511 - AZOBR_RS23585 0.63 +0.3 323,511 - AZOBR_RS23585 0.63 -1.0 323,511 - AZOBR_RS23585 0.63 -1.6 323,511 - AZOBR_RS23585 0.63 -0.9 323,511 - AZOBR_RS23585 0.63 -0.6 323,821 - -1.7 323,855 - -2.0
Or see this region's nucleotide sequence