Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23555 and AZOBR_RS23560 are separated by 107 nucleotides AZOBR_RS23560 and AZOBR_RS23565 overlap by 4 nucleotides
AZOBR_RS23555: AZOBR_RS23555 - beta-lactamase, at 315,105 to 315,995
_RS23555
AZOBR_RS23560: AZOBR_RS23560 - LysR family transcriptional regulator, at 316,103 to 316,978
_RS23560
AZOBR_RS23565: AZOBR_RS23565 - D-threo-aldose 1-dehydrogenase, at 316,975 to 317,925
_RS23565
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.065 kb on + strand at 316.886 kb on + strand, within AZOBR_RS23560 at 316.976 kb on + strand at 316.977 kb on - strand at 317.273 kb on + strand, within AZOBR_RS23565 at 317.273 kb on + strand, within AZOBR_RS23565 at 317.273 kb on + strand, within AZOBR_RS23565 at 317.274 kb on - strand, within AZOBR_RS23565 at 317.274 kb on - strand, within AZOBR_RS23565 at 317.274 kb on - strand, within AZOBR_RS23565 at 317.358 kb on - strand, within AZOBR_RS23565 at 317.561 kb on + strand, within AZOBR_RS23565 at 317.636 kb on + strand, within AZOBR_RS23565 at 317.637 kb on - strand, within AZOBR_RS23565 at 317.637 kb on - strand, within AZOBR_RS23565 at 317.637 kb on - strand, within AZOBR_RS23565 at 317.642 kb on + strand, within AZOBR_RS23565 at 317.642 kb on + strand, within AZOBR_RS23565 at 318.357 kb on + strand at 318.358 kb on - strand at 318.359 kb on + strand at 318.450 kb on + strand at 318.855 kb on + strand at 318.855 kb on + strand at 318.855 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 316,065 + -2.2 316,886 + AZOBR_RS23560 0.89 +0.8 316,976 + -0.7 316,977 - +0.8 317,273 + AZOBR_RS23565 0.31 -0.0 317,273 + AZOBR_RS23565 0.31 -1.0 317,273 + AZOBR_RS23565 0.31 +0.9 317,274 - AZOBR_RS23565 0.31 -0.1 317,274 - AZOBR_RS23565 0.31 -0.0 317,274 - AZOBR_RS23565 0.31 +0.1 317,358 - AZOBR_RS23565 0.40 +0.2 317,561 + AZOBR_RS23565 0.62 -1.4 317,636 + AZOBR_RS23565 0.70 +2.3 317,637 - AZOBR_RS23565 0.70 -0.5 317,637 - AZOBR_RS23565 0.70 +1.1 317,637 - AZOBR_RS23565 0.70 -1.0 317,642 + AZOBR_RS23565 0.70 -0.6 317,642 + AZOBR_RS23565 0.70 -0.1 318,357 + +0.4 318,358 - -1.6 318,359 + +0.2 318,450 + -2.0 318,855 + +0.1 318,855 + -1.5 318,855 + +0.3
Or see this region's nucleotide sequence