Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22805 and AZOBR_RS22810 overlap by 8 nucleotides AZOBR_RS22810 and AZOBR_RS22815 are separated by 1 nucleotides AZOBR_RS22815 and AZOBR_RS22820 are separated by 59 nucleotides
AZOBR_RS22805: AZOBR_RS22805 - ABC transporter permease, at 127,247 to 128,146
_RS22805
AZOBR_RS22810: AZOBR_RS22810 - ABC transporter permease, at 128,139 to 128,954
_RS22810
AZOBR_RS22815: AZOBR_RS22815 - transthyretin, at 128,956 to 129,312
_RS22815
AZOBR_RS22820: AZOBR_RS22820 - hypothetical protein, at 129,372 to 130,514
_RS22820
Position (kb) 128
129 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.185 kb on - strand at 127.213 kb on + strand at 127.214 kb on - strand at 127.214 kb on - strand at 127.445 kb on + strand, within AZOBR_RS22805 at 127.446 kb on - strand, within AZOBR_RS22805 at 127.559 kb on + strand, within AZOBR_RS22805 at 127.559 kb on + strand, within AZOBR_RS22805 at 127.559 kb on + strand, within AZOBR_RS22805 at 127.560 kb on - strand, within AZOBR_RS22805 at 127.560 kb on - strand, within AZOBR_RS22805 at 127.560 kb on - strand, within AZOBR_RS22805 at 127.561 kb on + strand, within AZOBR_RS22805 at 127.733 kb on + strand, within AZOBR_RS22805 at 127.733 kb on + strand, within AZOBR_RS22805 at 128.006 kb on + strand, within AZOBR_RS22805 at 128.007 kb on - strand, within AZOBR_RS22805 at 128.007 kb on - strand, within AZOBR_RS22805 at 128.007 kb on - strand, within AZOBR_RS22805 at 128.007 kb on - strand, within AZOBR_RS22805 at 128.007 kb on - strand, within AZOBR_RS22805 at 128.012 kb on + strand, within AZOBR_RS22805 at 128.013 kb on - strand, within AZOBR_RS22805 at 128.013 kb on - strand, within AZOBR_RS22805 at 128.013 kb on - strand, within AZOBR_RS22805 at 128.013 kb on - strand, within AZOBR_RS22805 at 128.013 kb on - strand, within AZOBR_RS22805 at 128.013 kb on - strand, within AZOBR_RS22805 at 128.133 kb on - strand at 128.133 kb on - strand at 128.298 kb on + strand, within AZOBR_RS22810 at 128.298 kb on + strand, within AZOBR_RS22810 at 128.598 kb on + strand, within AZOBR_RS22810 at 128.598 kb on + strand, within AZOBR_RS22810 at 128.685 kb on + strand, within AZOBR_RS22810 at 128.686 kb on - strand, within AZOBR_RS22810 at 128.686 kb on - strand, within AZOBR_RS22810 at 128.686 kb on - strand, within AZOBR_RS22810 at 128.686 kb on - strand, within AZOBR_RS22810 at 129.477 kb on + strand at 129.477 kb on + strand at 129.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 127,185 - +1.5 127,213 + -0.3 127,214 - +0.6 127,214 - -0.1 127,445 + AZOBR_RS22805 0.22 +0.1 127,446 - AZOBR_RS22805 0.22 -0.0 127,559 + AZOBR_RS22805 0.35 -0.5 127,559 + AZOBR_RS22805 0.35 -0.3 127,559 + AZOBR_RS22805 0.35 +1.6 127,560 - AZOBR_RS22805 0.35 +1.0 127,560 - AZOBR_RS22805 0.35 -1.5 127,560 - AZOBR_RS22805 0.35 +0.1 127,561 + AZOBR_RS22805 0.35 -2.6 127,733 + AZOBR_RS22805 0.54 -0.5 127,733 + AZOBR_RS22805 0.54 -0.1 128,006 + AZOBR_RS22805 0.84 -0.3 128,007 - AZOBR_RS22805 0.84 +0.4 128,007 - AZOBR_RS22805 0.84 +2.6 128,007 - AZOBR_RS22805 0.84 +0.5 128,007 - AZOBR_RS22805 0.84 -0.7 128,007 - AZOBR_RS22805 0.84 +0.2 128,012 + AZOBR_RS22805 0.85 +2.2 128,013 - AZOBR_RS22805 0.85 +0.9 128,013 - AZOBR_RS22805 0.85 +0.1 128,013 - AZOBR_RS22805 0.85 +0.1 128,013 - AZOBR_RS22805 0.85 +0.3 128,013 - AZOBR_RS22805 0.85 +0.3 128,013 - AZOBR_RS22805 0.85 -0.3 128,133 - +0.5 128,133 - -1.5 128,298 + AZOBR_RS22810 0.19 -0.2 128,298 + AZOBR_RS22810 0.19 +0.3 128,598 + AZOBR_RS22810 0.56 -0.0 128,598 + AZOBR_RS22810 0.56 +1.0 128,685 + AZOBR_RS22810 0.67 -0.7 128,686 - AZOBR_RS22810 0.67 -0.7 128,686 - AZOBR_RS22810 0.67 +1.6 128,686 - AZOBR_RS22810 0.67 +0.3 128,686 - AZOBR_RS22810 0.67 +1.1 129,477 + +0.0 129,477 + +0.7 129,478 - +0.7
Or see this region's nucleotide sequence