Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21775 and AZOBR_RS21780 are separated by 23 nucleotides AZOBR_RS21780 and AZOBR_RS21785 are separated by 25 nucleotides AZOBR_RS21785 and AZOBR_RS21790 are separated by 292 nucleotides
AZOBR_RS21775: AZOBR_RS21775 - peptide ABC transporter ATP-binding protein, at 1,660,899 to 1,661,888
_RS21775
AZOBR_RS21780: AZOBR_RS21780 - peptide ABC transporter ATP-binding protein, at 1,661,912 to 1,662,892
_RS21780
AZOBR_RS21785: AZOBR_RS21785 - hypothetical protein, at 1,662,918 to 1,663,097
_RS21785
AZOBR_RS21790: AZOBR_RS21790 - hemerythrin, at 1,663,390 to 1,663,800
_RS21790
Position (kb)
1661
1662
1663 Strain fitness (log2 ratio)
-2
-1
0
1 at 1661.580 kb on + strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.644 kb on - strand, within AZOBR_RS21775 at 1661.844 kb on + strand at 1661.963 kb on + strand at 1661.964 kb on - strand at 1661.964 kb on - strand at 1663.030 kb on + strand, within AZOBR_RS21785 at 1663.031 kb on - strand, within AZOBR_RS21785 at 1663.140 kb on - strand at 1663.140 kb on - strand at 1663.550 kb on - strand, within AZOBR_RS21790 at 1663.766 kb on - strand at 1663.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,661,580 + AZOBR_RS21775 0.69 -1.2 1,661,581 - AZOBR_RS21775 0.69 -0.3 1,661,581 - AZOBR_RS21775 0.69 -0.1 1,661,644 - AZOBR_RS21775 0.75 -0.0 1,661,844 + +0.1 1,661,963 + -0.7 1,661,964 - -0.5 1,661,964 - -0.2 1,663,030 + AZOBR_RS21785 0.62 -1.2 1,663,031 - AZOBR_RS21785 0.63 -2.6 1,663,140 - -0.4 1,663,140 - +0.0 1,663,550 - AZOBR_RS21790 0.39 +0.7 1,663,766 - +0.2 1,663,799 - -0.1
Or see this region's nucleotide sequence