Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11865

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11855 and AZOBR_RS11860 are separated by 12 nucleotidesAZOBR_RS11860 and AZOBR_RS11865 are separated by 20 nucleotidesAZOBR_RS11865 and AZOBR_RS11870 are separated by 122 nucleotides AZOBR_RS11855: AZOBR_RS11855 - transcription elongation factor GreB, at 2,493,692 to 2,494,255 _RS11855 AZOBR_RS11860: AZOBR_RS11860 - HAD family hydrolase, at 2,494,268 to 2,494,879 _RS11860 AZOBR_RS11865: AZOBR_RS11865 - membrane protein, at 2,494,900 to 2,495,655 _RS11865 AZOBR_RS11870: AZOBR_RS11870 - peptidase, at 2,495,778 to 2,497,094 _RS11870 Position (kb) 2494 2495 2496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2493.911 kb on + strand, within AZOBR_RS11855at 2493.911 kb on + strand, within AZOBR_RS11855at 2493.911 kb on + strand, within AZOBR_RS11855at 2493.912 kb on - strand, within AZOBR_RS11855at 2493.912 kb on - strand, within AZOBR_RS11855at 2493.912 kb on - strand, within AZOBR_RS11855at 2493.912 kb on - strand, within AZOBR_RS11855at 2493.912 kb on - strand, within AZOBR_RS11855at 2493.912 kb on - strand, within AZOBR_RS11855at 2493.912 kb on - strand, within AZOBR_RS11855at 2493.918 kb on - strand, within AZOBR_RS11855at 2493.918 kb on - strand, within AZOBR_RS11855at 2494.050 kb on - strand, within AZOBR_RS11855at 2494.269 kb on + strandat 2494.269 kb on + strandat 2494.269 kb on + strandat 2494.648 kb on - strand, within AZOBR_RS11860at 2494.648 kb on - strand, within AZOBR_RS11860at 2494.788 kb on + strand, within AZOBR_RS11860at 2494.809 kb on + strand, within AZOBR_RS11860at 2495.174 kb on + strand, within AZOBR_RS11865at 2495.174 kb on + strand, within AZOBR_RS11865at 2495.174 kb on + strand, within AZOBR_RS11865at 2495.331 kb on - strand, within AZOBR_RS11865at 2495.488 kb on + strand, within AZOBR_RS11865at 2495.489 kb on - strand, within AZOBR_RS11865at 2495.516 kb on + strand, within AZOBR_RS11865at 2495.516 kb on + strand, within AZOBR_RS11865at 2495.516 kb on + strand, within AZOBR_RS11865at 2496.274 kb on + strand, within AZOBR_RS11870at 2496.275 kb on - strand, within AZOBR_RS11870at 2496.320 kb on - strand, within AZOBR_RS11870at 2496.355 kb on + strand, within AZOBR_RS11870at 2496.587 kb on - strand, within AZOBR_RS11870at 2496.587 kb on - strand, within AZOBR_RS11870

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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2,493,911 + AZOBR_RS11855 0.39 -0.5
2,493,911 + AZOBR_RS11855 0.39 +0.8
2,493,911 + AZOBR_RS11855 0.39 -1.7
2,493,912 - AZOBR_RS11855 0.39 -1.4
2,493,912 - AZOBR_RS11855 0.39 +0.4
2,493,912 - AZOBR_RS11855 0.39 +0.6
2,493,912 - AZOBR_RS11855 0.39 +0.5
2,493,912 - AZOBR_RS11855 0.39 -1.0
2,493,912 - AZOBR_RS11855 0.39 -1.2
2,493,912 - AZOBR_RS11855 0.39 -0.8
2,493,918 - AZOBR_RS11855 0.40 -1.0
2,493,918 - AZOBR_RS11855 0.40 -0.1
2,494,050 - AZOBR_RS11855 0.63 -0.3
2,494,269 + -1.9
2,494,269 + -0.1
2,494,269 + +0.3
2,494,648 - AZOBR_RS11860 0.62 +0.7
2,494,648 - AZOBR_RS11860 0.62 -1.7
2,494,788 + AZOBR_RS11860 0.85 -1.4
2,494,809 + AZOBR_RS11860 0.88 +0.1
2,495,174 + AZOBR_RS11865 0.36 -1.2
2,495,174 + AZOBR_RS11865 0.36 -1.0
2,495,174 + AZOBR_RS11865 0.36 +0.3
2,495,331 - AZOBR_RS11865 0.57 -0.4
2,495,488 + AZOBR_RS11865 0.78 -2.0
2,495,489 - AZOBR_RS11865 0.78 -2.5
2,495,516 + AZOBR_RS11865 0.81 +2.3
2,495,516 + AZOBR_RS11865 0.81 -0.7
2,495,516 + AZOBR_RS11865 0.81 -3.3
2,496,274 + AZOBR_RS11870 0.38 +0.4
2,496,275 - AZOBR_RS11870 0.38 -0.0
2,496,320 - AZOBR_RS11870 0.41 -0.1
2,496,355 + AZOBR_RS11870 0.44 -0.7
2,496,587 - AZOBR_RS11870 0.61 +2.3
2,496,587 - AZOBR_RS11870 0.61 -1.3

Or see this region's nucleotide sequence