Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06755 and AZOBR_RS06760 are separated by 303 nucleotides AZOBR_RS06760 and AZOBR_RS06765 are separated by 138 nucleotides AZOBR_RS06765 and AZOBR_RS06770 are separated by 131 nucleotides
AZOBR_RS06755: AZOBR_RS06755 - ribulose-phosphate 3-epimerase, at 1,434,864 to 1,435,520
_RS06755
AZOBR_RS06760: AZOBR_RS06760 - molybdenum transport protein, at 1,435,824 to 1,436,243
_RS06760
AZOBR_RS06765: AZOBR_RS06765 - NADPH:quinone reductase, at 1,436,382 to 1,437,395
_RS06765
AZOBR_RS06770: AZOBR_RS06770 - HxlR family transcriptional regulator, at 1,437,527 to 1,437,850
_RS06770
Position (kb)
1436
1437
1438 Strain fitness (log2 ratio)
-1
0
1 at 1437.131 kb on - strand, within AZOBR_RS06765 at 1437.505 kb on + strand at 1437.505 kb on + strand at 1437.505 kb on + strand at 1437.626 kb on + strand, within AZOBR_RS06770 at 1437.627 kb on - strand, within AZOBR_RS06770 at 1437.753 kb on - strand, within AZOBR_RS06770 at 1437.753 kb on - strand, within AZOBR_RS06770 at 1437.779 kb on + strand, within AZOBR_RS06770 at 1437.973 kb on + strand at 1437.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,437,131 - AZOBR_RS06765 0.74 +0.9 1,437,505 + -0.3 1,437,505 + +0.2 1,437,505 + +1.7 1,437,626 + AZOBR_RS06770 0.31 -0.5 1,437,627 - AZOBR_RS06770 0.31 +1.0 1,437,753 - AZOBR_RS06770 0.70 +0.8 1,437,753 - AZOBR_RS06770 0.70 +0.8 1,437,779 + AZOBR_RS06770 0.78 +0.4 1,437,973 + -0.5 1,437,974 - -1.5
Or see this region's nucleotide sequence