Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03900

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03895 and AZOBR_RS03900 are separated by 11 nucleotidesAZOBR_RS03900 and AZOBR_RS03905 are separated by 1 nucleotides AZOBR_RS03895: AZOBR_RS03895 - hypothetical protein, at 822,321 to 823,928 _RS03895 AZOBR_RS03900: AZOBR_RS03900 - plasmid partitioning protein ParA, at 823,940 to 824,563 _RS03900 AZOBR_RS03905: AZOBR_RS03905 - hypothetical protein, at 824,565 to 825,953 _RS03905 Position (kb) 823 824 825Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 823.680 kb on + strand, within AZOBR_RS03895at 823.681 kb on - strand, within AZOBR_RS03895at 823.926 kb on + strandat 824.547 kb on - strandat 824.561 kb on + strandat 824.562 kb on - strandat 824.562 kb on - strandat 824.562 kb on - strandat 824.562 kb on - strandat 824.562 kb on - strandat 824.809 kb on + strand, within AZOBR_RS03905at 824.810 kb on - strand, within AZOBR_RS03905at 824.815 kb on + strand, within AZOBR_RS03905at 824.815 kb on + strand, within AZOBR_RS03905at 824.815 kb on + strand, within AZOBR_RS03905at 824.815 kb on + strand, within AZOBR_RS03905at 824.816 kb on - strand, within AZOBR_RS03905at 824.816 kb on - strand, within AZOBR_RS03905at 824.816 kb on - strand, within AZOBR_RS03905at 825.041 kb on - strand, within AZOBR_RS03905at 825.280 kb on + strand, within AZOBR_RS03905at 825.280 kb on + strand, within AZOBR_RS03905at 825.281 kb on - strand, within AZOBR_RS03905at 825.313 kb on + strand, within AZOBR_RS03905at 825.457 kb on + strand, within AZOBR_RS03905at 825.469 kb on + strand, within AZOBR_RS03905

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
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823,680 + AZOBR_RS03895 0.85 -0.3
823,681 - AZOBR_RS03895 0.85 +0.2
823,926 + -0.5
824,547 - +0.0
824,561 + +0.5
824,562 - -0.4
824,562 - -1.9
824,562 - +0.5
824,562 - -1.7
824,562 - +5.1
824,809 + AZOBR_RS03905 0.18 +1.4
824,810 - AZOBR_RS03905 0.18 +0.4
824,815 + AZOBR_RS03905 0.18 -0.7
824,815 + AZOBR_RS03905 0.18 +2.3
824,815 + AZOBR_RS03905 0.18 -1.0
824,815 + AZOBR_RS03905 0.18 -0.3
824,816 - AZOBR_RS03905 0.18 +1.1
824,816 - AZOBR_RS03905 0.18 +0.7
824,816 - AZOBR_RS03905 0.18 +2.1
825,041 - AZOBR_RS03905 0.34 -0.4
825,280 + AZOBR_RS03905 0.51 -0.3
825,280 + AZOBR_RS03905 0.51 +0.7
825,281 - AZOBR_RS03905 0.52 +0.5
825,313 + AZOBR_RS03905 0.54 -0.7
825,457 + AZOBR_RS03905 0.64 +0.0
825,469 + AZOBR_RS03905 0.65 +0.3

Or see this region's nucleotide sequence