Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03885 and AZOBR_RS03890 are separated by 149 nucleotides AZOBR_RS03890 and AZOBR_RS03895 are separated by 95 nucleotides
AZOBR_RS03885: AZOBR_RS03885 - phosphoglycerate kinase, at 819,773 to 820,969
_RS03885
AZOBR_RS03890: AZOBR_RS03890 - methyltransferase UbiE, at 821,119 to 822,225
_RS03890
AZOBR_RS03895: AZOBR_RS03895 - hypothetical protein, at 822,321 to 823,928
_RS03895
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1
2 at 821.113 kb on - strand at 821.113 kb on - strand at 821.239 kb on + strand, within AZOBR_RS03890 at 821.239 kb on + strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.386 kb on + strand, within AZOBR_RS03890 at 821.390 kb on - strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.936 kb on - strand, within AZOBR_RS03890 at 822.040 kb on + strand, within AZOBR_RS03890 at 822.116 kb on - strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.260 kb on + strand at 822.261 kb on - strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.465 kb on + strand at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 821,113 - +0.3 821,113 - -0.3 821,239 + AZOBR_RS03890 0.11 +2.3 821,239 + AZOBR_RS03890 0.11 -0.5 821,240 - AZOBR_RS03890 0.11 -0.5 821,240 - AZOBR_RS03890 0.11 +0.2 821,240 - AZOBR_RS03890 0.11 +0.7 821,240 - AZOBR_RS03890 0.11 -0.3 821,386 + AZOBR_RS03890 0.24 +0.4 821,390 - AZOBR_RS03890 0.24 +0.7 821,548 + AZOBR_RS03890 0.39 +0.7 821,548 + AZOBR_RS03890 0.39 -0.7 821,548 + AZOBR_RS03890 0.39 -2.0 821,548 + AZOBR_RS03890 0.39 +0.3 821,548 + AZOBR_RS03890 0.39 -0.4 821,819 - AZOBR_RS03890 0.63 +0.4 821,819 - AZOBR_RS03890 0.63 +0.1 821,935 + AZOBR_RS03890 0.74 +0.3 821,935 + AZOBR_RS03890 0.74 +0.0 821,936 - AZOBR_RS03890 0.74 -0.0 822,040 + AZOBR_RS03890 0.83 +0.5 822,116 - -0.5 822,184 + -0.4 822,184 + +0.1 822,184 + -0.1 822,184 + +0.3 822,184 + +0.8 822,184 + +0.5 822,184 + -0.4 822,185 - +0.0 822,185 - +1.1 822,185 - +1.2 822,185 - +1.5 822,185 - -1.5 822,185 - -1.6 822,185 - +0.3 822,260 + -0.6 822,261 - -1.0 822,462 + -0.5 822,462 + -0.6 822,462 + -1.9 822,462 + -0.3 822,463 - -1.0 822,463 - -1.7 822,463 - -0.1 822,465 + -2.1 822,534 + AZOBR_RS03895 0.13 +1.3 822,534 + AZOBR_RS03895 0.13 -1.3 822,534 + AZOBR_RS03895 0.13 -0.1
Or see this region's nucleotide sequence