Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03870 and AZOBR_RS03875 are separated by 3 nucleotides AZOBR_RS03875 and AZOBR_RS03880 are separated by 59 nucleotides AZOBR_RS03880 and AZOBR_RS03885 are separated by 159 nucleotides
AZOBR_RS03870: AZOBR_RS03870 - DNA polymerase III subunit gamma/tau, at 816,777 to 818,633
_RS03870
AZOBR_RS03875: AZOBR_RS03875 - hypothetical protein, at 818,637 to 818,960
_RS03875
AZOBR_RS03880: AZOBR_RS03880 - recombinase RecR, at 819,020 to 819,613
_RS03880
AZOBR_RS03885: AZOBR_RS03885 - phosphoglycerate kinase, at 819,773 to 820,969
_RS03885
Position (kb) 818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.573 kb on + strand at 818.573 kb on + strand at 818.601 kb on + strand at 818.601 kb on + strand at 818.602 kb on - strand at 818.959 kb on - strand at 818.959 kb on - strand at 818.980 kb on + strand at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.560 kb on + strand at 819.611 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.775 kb on - strand at 819.775 kb on - strand at 819.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 818,573 + +0.7 818,573 + +2.1 818,601 + -0.7 818,601 + +0.2 818,602 - -1.2 818,959 - -2.9 818,959 - -0.4 818,980 + -0.6 819,326 + AZOBR_RS03880 0.52 -1.9 819,326 + AZOBR_RS03880 0.52 +0.9 819,326 + AZOBR_RS03880 0.52 +0.4 819,326 + AZOBR_RS03880 0.52 -2.6 819,327 - AZOBR_RS03880 0.52 -0.2 819,327 - AZOBR_RS03880 0.52 -1.9 819,327 - AZOBR_RS03880 0.52 -3.0 819,327 - AZOBR_RS03880 0.52 -0.8 819,560 + +0.1 819,611 + -1.9 819,774 + -1.4 819,774 + -0.4 819,774 + +0.4 819,775 - -2.7 819,775 - +2.3 819,775 - -1.6
Or see this region's nucleotide sequence