Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01560 and AZOBR_RS01565 are separated by 98 nucleotides AZOBR_RS01565 and AZOBR_RS01570 are separated by 82 nucleotides AZOBR_RS01570 and AZOBR_RS01575 are separated by 164 nucleotides
AZOBR_RS01560: AZOBR_RS01560 - hypothetical protein, at 321,012 to 321,833
_RS01560
AZOBR_RS01565: AZOBR_RS01565 - endonuclease III, at 321,932 to 322,579
_RS01565
AZOBR_RS01570: AZOBR_RS01570 - hypothetical protein, at 322,662 to 323,180
_RS01570
AZOBR_RS01575: AZOBR_RS01575 - 6-O-methylguanine DNA methyltransferase, at 323,345 to 324,169
_RS01575
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 321.283 kb on - strand, within AZOBR_RS01560 at 321.738 kb on + strand, within AZOBR_RS01560 at 321.738 kb on + strand, within AZOBR_RS01560 at 321.739 kb on - strand, within AZOBR_RS01560 at 321.739 kb on - strand, within AZOBR_RS01560 at 321.739 kb on - strand, within AZOBR_RS01560 at 321.739 kb on - strand, within AZOBR_RS01560 at 321.739 kb on - strand, within AZOBR_RS01560 at 321.739 kb on - strand, within AZOBR_RS01560 at 321.739 kb on - strand, within AZOBR_RS01560 at 321.832 kb on - strand at 322.026 kb on + strand, within AZOBR_RS01565 at 322.027 kb on - strand, within AZOBR_RS01565 at 322.281 kb on + strand, within AZOBR_RS01565 at 322.357 kb on - strand, within AZOBR_RS01565 at 322.491 kb on + strand, within AZOBR_RS01565 at 322.503 kb on + strand, within AZOBR_RS01565 at 322.503 kb on + strand, within AZOBR_RS01565 at 322.503 kb on + strand, within AZOBR_RS01565 at 322.504 kb on - strand, within AZOBR_RS01565 at 322.504 kb on - strand, within AZOBR_RS01565 at 322.905 kb on + strand, within AZOBR_RS01570 at 322.906 kb on - strand, within AZOBR_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 321,283 - AZOBR_RS01560 0.33 +1.8 321,738 + AZOBR_RS01560 0.88 +0.1 321,738 + AZOBR_RS01560 0.88 +0.0 321,739 - AZOBR_RS01560 0.88 -0.4 321,739 - AZOBR_RS01560 0.88 -2.7 321,739 - AZOBR_RS01560 0.88 +1.7 321,739 - AZOBR_RS01560 0.88 -0.1 321,739 - AZOBR_RS01560 0.88 +1.5 321,739 - AZOBR_RS01560 0.88 +0.9 321,739 - AZOBR_RS01560 0.88 -0.2 321,832 - -0.9 322,026 + AZOBR_RS01565 0.15 +0.9 322,027 - AZOBR_RS01565 0.15 -0.4 322,281 + AZOBR_RS01565 0.54 -1.4 322,357 - AZOBR_RS01565 0.66 +0.8 322,491 + AZOBR_RS01565 0.86 -1.2 322,503 + AZOBR_RS01565 0.88 -1.1 322,503 + AZOBR_RS01565 0.88 -1.2 322,503 + AZOBR_RS01565 0.88 +0.9 322,504 - AZOBR_RS01565 0.88 -2.8 322,504 - AZOBR_RS01565 0.88 -2.6 322,905 + AZOBR_RS01570 0.47 -0.4 322,906 - AZOBR_RS01570 0.47 +1.4
Or see this region's nucleotide sequence