Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00105 and AZOBR_RS00110 are separated by 164 nucleotides AZOBR_RS00110 and AZOBR_RS00115 are separated by 350 nucleotides AZOBR_RS00115 and AZOBR_RS00120 are separated by 41 nucleotides AZOBR_RS00120 and AZOBR_RS00125 are separated by 7 nucleotides AZOBR_RS00125 and AZOBR_RS00130 are separated by 148 nucleotides
AZOBR_RS00105: AZOBR_RS00105 - ornithine decarboxylase, at 10,418 to 11,554
_RS00105
AZOBR_RS00110: AZOBR_RS00110 - hypothetical protein, at 11,719 to 11,898
_RS00110
AZOBR_RS00115: AZOBR_RS00115 - HAD hydrolase, at 12,249 to 12,935
_RS00115
AZOBR_RS00120: AZOBR_RS00120 - cupin, at 12,977 to 13,321
_RS00120
AZOBR_RS00125: AZOBR_RS00125 - hypothetical protein, at 13,329 to 13,727
_RS00125
AZOBR_RS00130: AZOBR_RS00130 - hypothetical protein, at 13,876 to 14,280
_RS00130
Position (kb) 12
13 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.267 kb on + strand, within AZOBR_RS00105 at 11.324 kb on + strand, within AZOBR_RS00105 at 11.414 kb on + strand, within AZOBR_RS00105 at 11.414 kb on + strand, within AZOBR_RS00105 at 11.415 kb on - strand at 11.430 kb on - strand, within AZOBR_RS00105 at 11.501 kb on + strand at 11.501 kb on + strand at 11.502 kb on - strand at 11.502 kb on - strand at 11.721 kb on - strand at 11.876 kb on + strand, within AZOBR_RS00110 at 11.876 kb on + strand, within AZOBR_RS00110 at 11.876 kb on + strand, within AZOBR_RS00110 at 11.950 kb on - strand at 11.950 kb on - strand at 12.054 kb on + strand at 12.055 kb on - strand at 12.111 kb on - strand at 12.209 kb on - strand at 12.209 kb on - strand at 12.882 kb on + strand at 12.882 kb on + strand at 13.148 kb on + strand, within AZOBR_RS00120 at 13.149 kb on - strand, within AZOBR_RS00120 at 13.163 kb on + strand, within AZOBR_RS00120 at 13.164 kb on - strand, within AZOBR_RS00120 at 13.301 kb on + strand at 13.301 kb on + strand at 13.302 kb on - strand at 13.302 kb on - strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.763 kb on - strand at 13.763 kb on - strand at 13.763 kb on - strand at 13.931 kb on + strand, within AZOBR_RS00130 at 13.931 kb on + strand, within AZOBR_RS00130 at 13.932 kb on - strand, within AZOBR_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 11,267 + AZOBR_RS00105 0.75 -0.9 11,324 + AZOBR_RS00105 0.80 +1.6 11,414 + AZOBR_RS00105 0.88 +1.6 11,414 + AZOBR_RS00105 0.88 -0.1 11,415 - -0.4 11,430 - AZOBR_RS00105 0.89 +0.7 11,501 + -0.8 11,501 + -0.3 11,502 - +0.8 11,502 - +0.5 11,721 - +0.1 11,876 + AZOBR_RS00110 0.87 -0.3 11,876 + AZOBR_RS00110 0.87 -2.2 11,876 + AZOBR_RS00110 0.87 -0.8 11,950 - -1.7 11,950 - -0.5 12,054 + +0.5 12,055 - -0.5 12,111 - +1.3 12,209 - -0.4 12,209 - +2.4 12,882 + -0.8 12,882 + +0.1 13,148 + AZOBR_RS00120 0.50 -2.3 13,149 - AZOBR_RS00120 0.50 -0.4 13,163 + AZOBR_RS00120 0.54 -1.0 13,164 - AZOBR_RS00120 0.54 +0.4 13,301 + +2.4 13,301 + +0.5 13,302 - +0.9 13,302 - -0.1 13,762 + +0.3 13,762 + -0.2 13,762 + -1.0 13,763 - -0.4 13,763 - -1.1 13,763 - -0.4 13,931 + AZOBR_RS00130 0.14 +1.0 13,931 + AZOBR_RS00130 0.14 +0.5 13,932 - AZOBR_RS00130 0.14 -0.8
Or see this region's nucleotide sequence