Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24375 and AO356_24380 overlap by 4 nucleotides AO356_24380 and AO356_24385 are separated by 458 nucleotides
AO356_24375: AO356_24375 - type VI secretion protein, at 5,503,498 to 5,504,574
_24375
AO356_24380: AO356_24380 - hydroxyacid dehydrogenase, at 5,504,571 to 5,505,524
_24380
AO356_24385: AO356_24385 - serine/threonine protein kinase, at 5,505,983 to 5,507,263
_24385
Position (kb) 5504
5505
5506 Strain fitness (log2 ratio) -2
-1
0
1 at 5503.918 kb on + strand, within AO356_24375 at 5504.021 kb on + strand, within AO356_24375 at 5504.021 kb on + strand, within AO356_24375 at 5504.022 kb on - strand, within AO356_24375 at 5504.022 kb on - strand, within AO356_24375 at 5504.219 kb on - strand, within AO356_24375 at 5504.262 kb on - strand, within AO356_24375 at 5504.706 kb on + strand, within AO356_24380 at 5504.984 kb on - strand, within AO356_24380 at 5505.016 kb on + strand, within AO356_24380 at 5505.481 kb on + strand at 5505.482 kb on - strand at 5505.575 kb on - strand at 5505.672 kb on + strand at 5505.857 kb on - strand at 5506.119 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.193 kb on + strand, within AO356_24385 at 5506.194 kb on - strand, within AO356_24385 at 5506.194 kb on - strand, within AO356_24385 at 5506.194 kb on - strand, within AO356_24385 at 5506.308 kb on - strand, within AO356_24385 at 5506.341 kb on - strand, within AO356_24385 at 5506.503 kb on - strand, within AO356_24385 at 5506.503 kb on - strand, within AO356_24385 at 5506.503 kb on - strand, within AO356_24385
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 5,503,918 + AO356_24375 0.39 +1.6 5,504,021 + AO356_24375 0.49 +1.6 5,504,021 + AO356_24375 0.49 -0.3 5,504,022 - AO356_24375 0.49 +1.0 5,504,022 - AO356_24375 0.49 +0.7 5,504,219 - AO356_24375 0.67 +0.1 5,504,262 - AO356_24375 0.71 +1.3 5,504,706 + AO356_24380 0.14 -0.1 5,504,984 - AO356_24380 0.43 -0.2 5,505,016 + AO356_24380 0.47 -0.3 5,505,481 + -1.2 5,505,482 - +1.1 5,505,575 - -2.7 5,505,672 + +1.0 5,505,857 - +0.2 5,506,119 + AO356_24385 0.11 +0.2 5,506,193 + AO356_24385 0.16 +0.2 5,506,193 + AO356_24385 0.16 -0.8 5,506,193 + AO356_24385 0.16 +0.1 5,506,193 + AO356_24385 0.16 +0.5 5,506,194 - AO356_24385 0.16 +0.4 5,506,194 - AO356_24385 0.16 +0.1 5,506,194 - AO356_24385 0.16 +0.2 5,506,308 - AO356_24385 0.25 +0.9 5,506,341 - AO356_24385 0.28 +0.2 5,506,503 - AO356_24385 0.41 -0.5 5,506,503 - AO356_24385 0.41 -0.2 5,506,503 - AO356_24385 0.41 +0.2
Or see this region's nucleotide sequence