Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04825

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04815 and AO356_04820 are separated by 223 nucleotidesAO356_04820 and AO356_04825 overlap by 4 nucleotidesAO356_04825 and AO356_04830 are separated by 178 nucleotides AO356_04815: AO356_04815 - hypothetical protein, at 1,084,538 to 1,085,128 _04815 AO356_04820: AO356_04820 - amidase, at 1,085,352 to 1,085,663 _04820 AO356_04825: AO356_04825 - serine hydrolase, at 1,085,660 to 1,086,754 _04825 AO356_04830: AO356_04830 - acyl-CoA dehydrogenase, at 1,086,933 to 1,087,805 _04830 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -2 -1 0 1at 1084.728 kb on + strand, within AO356_04815at 1084.729 kb on - strand, within AO356_04815at 1085.050 kb on - strand, within AO356_04815at 1085.128 kb on + strandat 1085.128 kb on + strandat 1085.128 kb on + strandat 1085.129 kb on - strandat 1085.129 kb on - strandat 1085.129 kb on - strandat 1085.129 kb on - strandat 1085.129 kb on - strandat 1085.129 kb on - strandat 1085.129 kb on - strandat 1085.147 kb on + strandat 1085.147 kb on + strandat 1085.148 kb on - strandat 1085.148 kb on - strandat 1085.218 kb on - strandat 1085.243 kb on + strandat 1085.244 kb on - strandat 1085.244 kb on - strandat 1085.244 kb on - strandat 1085.244 kb on - strandat 1085.244 kb on - strandat 1085.316 kb on + strandat 1085.316 kb on + strandat 1085.316 kb on + strandat 1085.317 kb on - strandat 1085.348 kb on + strandat 1085.348 kb on + strandat 1085.349 kb on - strandat 1085.497 kb on + strand, within AO356_04820at 1085.497 kb on + strand, within AO356_04820at 1085.497 kb on + strand, within AO356_04820at 1085.498 kb on - strand, within AO356_04820at 1085.498 kb on - strand, within AO356_04820at 1085.521 kb on + strand, within AO356_04820at 1085.522 kb on - strand, within AO356_04820at 1085.522 kb on - strand, within AO356_04820at 1085.536 kb on + strand, within AO356_04820at 1085.536 kb on + strand, within AO356_04820at 1085.536 kb on + strand, within AO356_04820at 1085.537 kb on - strand, within AO356_04820at 1085.537 kb on - strand, within AO356_04820at 1085.551 kb on + strand, within AO356_04820at 1085.551 kb on + strand, within AO356_04820at 1085.551 kb on + strand, within AO356_04820at 1085.551 kb on + strand, within AO356_04820at 1085.625 kb on + strand, within AO356_04820at 1085.722 kb on - strandat 1085.781 kb on + strand, within AO356_04825at 1085.781 kb on + strand, within AO356_04825at 1085.781 kb on + strand, within AO356_04825at 1085.782 kb on - strand, within AO356_04825at 1085.782 kb on - strand, within AO356_04825at 1085.818 kb on + strand, within AO356_04825at 1086.036 kb on + strand, within AO356_04825at 1086.042 kb on + strand, within AO356_04825at 1086.042 kb on + strand, within AO356_04825at 1086.043 kb on - strand, within AO356_04825at 1086.043 kb on - strand, within AO356_04825at 1086.043 kb on - strand, within AO356_04825at 1086.043 kb on - strand, within AO356_04825at 1086.201 kb on + strand, within AO356_04825at 1086.279 kb on + strand, within AO356_04825at 1086.279 kb on + strand, within AO356_04825at 1086.280 kb on - strand, within AO356_04825at 1086.280 kb on - strand, within AO356_04825at 1086.280 kb on - strand, within AO356_04825at 1086.280 kb on - strand, within AO356_04825at 1086.315 kb on + strand, within AO356_04825at 1086.322 kb on - strand, within AO356_04825at 1086.402 kb on + strand, within AO356_04825at 1086.402 kb on + strand, within AO356_04825at 1086.405 kb on + strand, within AO356_04825at 1086.405 kb on + strand, within AO356_04825at 1086.405 kb on + strand, within AO356_04825at 1086.405 kb on + strand, within AO356_04825at 1086.405 kb on + strand, within AO356_04825at 1086.405 kb on + strand, within AO356_04825at 1086.406 kb on - strand, within AO356_04825at 1086.406 kb on - strand, within AO356_04825at 1086.540 kb on + strand, within AO356_04825at 1086.541 kb on - strand, within AO356_04825at 1086.624 kb on + strand, within AO356_04825at 1086.625 kb on - strand, within AO356_04825at 1086.625 kb on - strand, within AO356_04825at 1086.625 kb on - strand, within AO356_04825at 1086.625 kb on - strand, within AO356_04825at 1086.720 kb on - strandat 1086.774 kb on + strandat 1087.213 kb on + strand, within AO356_04830at 1087.213 kb on + strand, within AO356_04830at 1087.214 kb on - strand, within AO356_04830at 1087.214 kb on - strand, within AO356_04830at 1087.214 kb on - strand, within AO356_04830at 1087.214 kb on - strand, within AO356_04830at 1087.214 kb on - strand, within AO356_04830at 1087.239 kb on + strand, within AO356_04830at 1087.239 kb on + strand, within AO356_04830at 1087.239 kb on + strand, within AO356_04830at 1087.240 kb on - strand, within AO356_04830at 1087.243 kb on + strand, within AO356_04830at 1087.243 kb on + strand, within AO356_04830at 1087.243 kb on + strand, within AO356_04830at 1087.244 kb on - strand, within AO356_04830at 1087.244 kb on - strand, within AO356_04830at 1087.244 kb on - strand, within AO356_04830at 1087.244 kb on - strand, within AO356_04830at 1087.244 kb on - strand, within AO356_04830at 1087.244 kb on - strand, within AO356_04830at 1087.276 kb on + strand, within AO356_04830at 1087.277 kb on - strand, within AO356_04830at 1087.277 kb on - strand, within AO356_04830at 1087.738 kb on + strandat 1087.739 kb on - strandat 1087.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,084,728 + AO356_04815 0.32 +0.6
1,084,729 - AO356_04815 0.32 +0.2
1,085,050 - AO356_04815 0.87 -0.1
1,085,128 + -0.4
1,085,128 + +0.4
1,085,128 + +0.4
1,085,129 - +1.4
1,085,129 - -0.1
1,085,129 - +0.9
1,085,129 - -0.5
1,085,129 - +0.9
1,085,129 - -0.6
1,085,129 - -0.3
1,085,147 + -0.5
1,085,147 + +0.3
1,085,148 - -0.7
1,085,148 - +0.1
1,085,218 - +0.6
1,085,243 + -0.0
1,085,244 - +0.1
1,085,244 - -0.3
1,085,244 - +0.9
1,085,244 - -1.7
1,085,244 - +0.2
1,085,316 + +0.0
1,085,316 + +1.1
1,085,316 + +0.3
1,085,317 - +0.6
1,085,348 + +0.3
1,085,348 + -0.4
1,085,349 - +0.4
1,085,497 + AO356_04820 0.46 -0.1
1,085,497 + AO356_04820 0.46 -0.4
1,085,497 + AO356_04820 0.46 -0.1
1,085,498 - AO356_04820 0.47 +0.2
1,085,498 - AO356_04820 0.47 -0.8
1,085,521 + AO356_04820 0.54 +0.6
1,085,522 - AO356_04820 0.54 +0.6
1,085,522 - AO356_04820 0.54 -2.0
1,085,536 + AO356_04820 0.59 +0.4
1,085,536 + AO356_04820 0.59 +1.4
1,085,536 + AO356_04820 0.59 -0.4
1,085,537 - AO356_04820 0.59 -0.3
1,085,537 - AO356_04820 0.59 +0.7
1,085,551 + AO356_04820 0.64 -0.1
1,085,551 + AO356_04820 0.64 +0.3
1,085,551 + AO356_04820 0.64 +0.2
1,085,551 + AO356_04820 0.64 -0.6
1,085,625 + AO356_04820 0.88 +0.0
1,085,722 - -0.4
1,085,781 + AO356_04825 0.11 +0.9
1,085,781 + AO356_04825 0.11 -0.4
1,085,781 + AO356_04825 0.11 +0.4
1,085,782 - AO356_04825 0.11 -0.9
1,085,782 - AO356_04825 0.11 -0.6
1,085,818 + AO356_04825 0.14 +0.3
1,086,036 + AO356_04825 0.34 +0.4
1,086,042 + AO356_04825 0.35 +0.3
1,086,042 + AO356_04825 0.35 -0.0
1,086,043 - AO356_04825 0.35 +0.1
1,086,043 - AO356_04825 0.35 -0.3
1,086,043 - AO356_04825 0.35 +0.5
1,086,043 - AO356_04825 0.35 +0.1
1,086,201 + AO356_04825 0.49 -0.0
1,086,279 + AO356_04825 0.57 +0.6
1,086,279 + AO356_04825 0.57 +0.1
1,086,280 - AO356_04825 0.57 +0.5
1,086,280 - AO356_04825 0.57 +0.0
1,086,280 - AO356_04825 0.57 -0.4
1,086,280 - AO356_04825 0.57 +0.0
1,086,315 + AO356_04825 0.60 +0.8
1,086,322 - AO356_04825 0.60 +1.0
1,086,402 + AO356_04825 0.68 +0.6
1,086,402 + AO356_04825 0.68 +0.5
1,086,405 + AO356_04825 0.68 +0.5
1,086,405 + AO356_04825 0.68 -0.5
1,086,405 + AO356_04825 0.68 +1.3
1,086,405 + AO356_04825 0.68 +1.0
1,086,405 + AO356_04825 0.68 +0.7
1,086,405 + AO356_04825 0.68 -0.6
1,086,406 - AO356_04825 0.68 +0.4
1,086,406 - AO356_04825 0.68 -0.7
1,086,540 + AO356_04825 0.80 +1.0
1,086,541 - AO356_04825 0.80 +0.3
1,086,624 + AO356_04825 0.88 -0.4
1,086,625 - AO356_04825 0.88 -0.5
1,086,625 - AO356_04825 0.88 -0.8
1,086,625 - AO356_04825 0.88 +0.4
1,086,625 - AO356_04825 0.88 +0.5
1,086,720 - +0.3
1,086,774 + -0.1
1,087,213 + AO356_04830 0.32 +1.2
1,087,213 + AO356_04830 0.32 -1.2
1,087,214 - AO356_04830 0.32 -0.5
1,087,214 - AO356_04830 0.32 +0.7
1,087,214 - AO356_04830 0.32 +0.5
1,087,214 - AO356_04830 0.32 -0.0
1,087,214 - AO356_04830 0.32 +0.2
1,087,239 + AO356_04830 0.35 +1.0
1,087,239 + AO356_04830 0.35 +0.6
1,087,239 + AO356_04830 0.35 +0.4
1,087,240 - AO356_04830 0.35 -0.5
1,087,243 + AO356_04830 0.36 +0.3
1,087,243 + AO356_04830 0.36 +0.2
1,087,243 + AO356_04830 0.36 -1.2
1,087,244 - AO356_04830 0.36 +0.3
1,087,244 - AO356_04830 0.36 -1.0
1,087,244 - AO356_04830 0.36 -0.5
1,087,244 - AO356_04830 0.36 -0.9
1,087,244 - AO356_04830 0.36 -0.8
1,087,244 - AO356_04830 0.36 +0.2
1,087,276 + AO356_04830 0.39 +0.2
1,087,277 - AO356_04830 0.39 -1.6
1,087,277 - AO356_04830 0.39 +0.0
1,087,738 + -0.4
1,087,739 - +0.1
1,087,739 - +0.8

Or see this region's nucleotide sequence