Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00630

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00625 and AO356_00630 are separated by 9 nucleotidesAO356_00630 and AO356_00635 are separated by 83 nucleotidesAO356_00635 and AO356_00640 are separated by 163 nucleotides AO356_00625: AO356_00625 - (Fe-S)-binding protein, at 133,960 to 135,216 _00625 AO356_00630: AO356_00630 - ferredoxin, at 135,226 to 136,362 _00630 AO356_00635: AO356_00635 - phenylacetic acid degradation protein, at 136,446 to 136,886 _00635 AO356_00640: AO356_00640 - TetR family transcriptional regulator, at 137,050 to 137,670 _00640 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 134.285 kb on - strand, within AO356_00625at 134.299 kb on + strand, within AO356_00625at 134.482 kb on + strand, within AO356_00625at 134.483 kb on - strand, within AO356_00625at 134.510 kb on - strand, within AO356_00625at 134.510 kb on - strand, within AO356_00625at 134.573 kb on - strand, within AO356_00625at 134.728 kb on + strand, within AO356_00625at 134.729 kb on - strand, within AO356_00625at 134.947 kb on + strand, within AO356_00625at 134.947 kb on + strand, within AO356_00625at 135.124 kb on + strandat 135.125 kb on - strandat 135.125 kb on - strandat 135.125 kb on - strandat 135.160 kb on + strandat 135.160 kb on + strandat 135.185 kb on - strandat 135.282 kb on + strandat 135.283 kb on - strandat 135.487 kb on + strand, within AO356_00630at 135.487 kb on + strand, within AO356_00630at 135.488 kb on - strand, within AO356_00630at 135.665 kb on - strand, within AO356_00630at 135.665 kb on - strand, within AO356_00630at 135.967 kb on + strand, within AO356_00630at 135.968 kb on - strand, within AO356_00630at 136.021 kb on + strand, within AO356_00630at 136.360 kb on + strandat 136.361 kb on - strandat 136.447 kb on + strandat 136.458 kb on + strandat 136.458 kb on + strandat 136.603 kb on + strand, within AO356_00635at 136.810 kb on + strand, within AO356_00635at 136.811 kb on - strand, within AO356_00635at 136.833 kb on - strand, within AO356_00635at 136.833 kb on - strand, within AO356_00635at 136.864 kb on + strandat 136.864 kb on + strandat 136.864 kb on + strandat 136.864 kb on + strandat 136.864 kb on + strandat 136.865 kb on - strandat 136.931 kb on - strandat 137.019 kb on + strandat 137.020 kb on - strandat 137.020 kb on - strandat 137.020 kb on - strandat 137.153 kb on + strand, within AO356_00640at 137.154 kb on - strand, within AO356_00640at 137.154 kb on - strand, within AO356_00640at 137.212 kb on + strand, within AO356_00640at 137.213 kb on - strand, within AO356_00640at 137.213 kb on - strand, within AO356_00640at 137.213 kb on - strand, within AO356_00640at 137.254 kb on + strand, within AO356_00640at 137.255 kb on - strand, within AO356_00640at 137.255 kb on - strand, within AO356_00640at 137.296 kb on + strand, within AO356_00640at 137.296 kb on + strand, within AO356_00640at 137.296 kb on + strand, within AO356_00640at 137.297 kb on - strand, within AO356_00640at 137.297 kb on - strand, within AO356_00640at 137.350 kb on + strand, within AO356_00640at 137.350 kb on + strand, within AO356_00640

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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134,285 - AO356_00625 0.26 +0.8
134,299 + AO356_00625 0.27 +0.7
134,482 + AO356_00625 0.42 +1.5
134,483 - AO356_00625 0.42 -1.0
134,510 - AO356_00625 0.44 +0.5
134,510 - AO356_00625 0.44 +0.4
134,573 - AO356_00625 0.49 +0.2
134,728 + AO356_00625 0.61 +0.2
134,729 - AO356_00625 0.61 +0.7
134,947 + AO356_00625 0.79 -0.3
134,947 + AO356_00625 0.79 +1.4
135,124 + -0.7
135,125 - +1.6
135,125 - -0.0
135,125 - -0.9
135,160 + -0.5
135,160 + +0.3
135,185 - +0.7
135,282 + -0.7
135,283 - +0.4
135,487 + AO356_00630 0.23 +0.2
135,487 + AO356_00630 0.23 -0.6
135,488 - AO356_00630 0.23 +1.3
135,665 - AO356_00630 0.39 -0.7
135,665 - AO356_00630 0.39 -0.3
135,967 + AO356_00630 0.65 +0.1
135,968 - AO356_00630 0.65 -0.5
136,021 + AO356_00630 0.70 +0.5
136,360 + -0.6
136,361 - +0.4
136,447 + -0.4
136,458 + -0.5
136,458 + -0.3
136,603 + AO356_00635 0.36 -0.0
136,810 + AO356_00635 0.83 +0.2
136,811 - AO356_00635 0.83 +0.1
136,833 - AO356_00635 0.88 +0.3
136,833 - AO356_00635 0.88 +1.2
136,864 + +0.4
136,864 + -1.8
136,864 + +0.6
136,864 + +0.1
136,864 + -0.1
136,865 - -0.7
136,931 - +0.5
137,019 + -0.2
137,020 - -0.6
137,020 - +0.4
137,020 - -0.9
137,153 + AO356_00640 0.17 -1.1
137,154 - AO356_00640 0.17 -0.3
137,154 - AO356_00640 0.17 -0.3
137,212 + AO356_00640 0.26 +0.8
137,213 - AO356_00640 0.26 +0.9
137,213 - AO356_00640 0.26 -0.5
137,213 - AO356_00640 0.26 +0.8
137,254 + AO356_00640 0.33 -0.6
137,255 - AO356_00640 0.33 -0.1
137,255 - AO356_00640 0.33 -1.0
137,296 + AO356_00640 0.40 +0.3
137,296 + AO356_00640 0.40 -0.4
137,296 + AO356_00640 0.40 -0.2
137,297 - AO356_00640 0.40 +0.5
137,297 - AO356_00640 0.40 +0.3
137,350 + AO356_00640 0.48 -0.7
137,350 + AO356_00640 0.48 -1.1

Or see this region's nucleotide sequence