Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22505 and AO353_22510 are separated by 400 nucleotides AO353_22510 and AO353_22515 are separated by 125 nucleotides
AO353_22505: AO353_22505 - hypothetical protein, at 4,936,683 to 4,937,039
_22505
AO353_22510: AO353_22510 - hypothetical protein, at 4,937,440 to 4,937,631
_22510
AO353_22515: AO353_22515 - poly-gamma-glutamate biosynthesis protein, at 4,937,757 to 4,938,869
_22515
Position (kb)
4937
4938 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4936.563 kb on - strand at 4936.573 kb on + strand at 4936.574 kb on - strand at 4936.580 kb on + strand at 4936.656 kb on - strand at 4936.684 kb on + strand at 4936.685 kb on - strand at 4936.685 kb on - strand at 4936.714 kb on + strand at 4936.714 kb on + strand at 4936.715 kb on - strand at 4936.715 kb on - strand at 4936.715 kb on - strand at 4936.715 kb on - strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.725 kb on - strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.769 kb on - strand, within AO353_22505 at 4936.769 kb on - strand, within AO353_22505 at 4936.776 kb on + strand, within AO353_22505 at 4936.776 kb on + strand, within AO353_22505 at 4936.777 kb on - strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.798 kb on - strand, within AO353_22505 at 4936.798 kb on - strand, within AO353_22505 at 4936.798 kb on - strand, within AO353_22505 at 4936.800 kb on + strand, within AO353_22505 at 4936.801 kb on - strand, within AO353_22505 at 4936.801 kb on - strand, within AO353_22505 at 4936.801 kb on - strand, within AO353_22505 at 4936.830 kb on + strand, within AO353_22505 at 4936.935 kb on + strand, within AO353_22505 at 4936.935 kb on + strand, within AO353_22505 at 4937.053 kb on + strand at 4937.054 kb on - strand at 4937.054 kb on - strand at 4937.054 kb on - strand at 4937.054 kb on - strand at 4937.078 kb on - strand at 4937.209 kb on + strand at 4937.209 kb on + strand at 4937.209 kb on + strand at 4937.209 kb on + strand at 4937.254 kb on + strand at 4937.254 kb on + strand at 4937.254 kb on + strand at 4937.254 kb on + strand at 4937.257 kb on + strand at 4937.257 kb on + strand at 4937.427 kb on + strand at 4937.428 kb on - strand at 4937.428 kb on - strand at 4937.500 kb on - strand, within AO353_22510 at 4937.598 kb on + strand, within AO353_22510 at 4937.598 kb on + strand, within AO353_22510 at 4937.599 kb on - strand, within AO353_22510 at 4937.599 kb on - strand, within AO353_22510 at 4937.599 kb on - strand, within AO353_22510 at 4937.610 kb on + strand, within AO353_22510 at 4937.610 kb on + strand, within AO353_22510 at 4937.610 kb on + strand, within AO353_22510 at 4937.611 kb on - strand, within AO353_22510 at 4937.646 kb on + strand at 4937.647 kb on - strand at 4937.677 kb on + strand at 4937.701 kb on + strand at 4937.701 kb on + strand at 4937.713 kb on + strand at 4937.758 kb on + strand at 4937.951 kb on - strand, within AO353_22515 at 4937.951 kb on - strand, within AO353_22515 at 4937.951 kb on - strand, within AO353_22515 at 4938.002 kb on - strand, within AO353_22515 at 4938.028 kb on + strand, within AO353_22515 at 4938.432 kb on - strand, within AO353_22515
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 4,936,563 - -0.3 4,936,573 + -1.4 4,936,574 - -1.4 4,936,580 + -0.1 4,936,656 - +0.7 4,936,684 + -0.2 4,936,685 - -1.5 4,936,685 - -0.0 4,936,714 + -0.5 4,936,714 + -1.1 4,936,715 - -0.1 4,936,715 - +0.8 4,936,715 - +0.5 4,936,715 - -0.8 4,936,718 + +0.5 4,936,718 + +1.2 4,936,718 + +0.2 4,936,718 + +1.0 4,936,718 + -0.9 4,936,718 + -2.1 4,936,718 + -0.3 4,936,719 - AO353_22505 0.10 +0.3 4,936,719 - AO353_22505 0.10 +0.7 4,936,719 - AO353_22505 0.10 -0.0 4,936,719 - AO353_22505 0.10 -0.1 4,936,719 - AO353_22505 0.10 -0.2 4,936,719 - AO353_22505 0.10 -0.8 4,936,719 - AO353_22505 0.10 +0.6 4,936,719 - AO353_22505 0.10 +0.2 4,936,719 - AO353_22505 0.10 +0.5 4,936,725 - AO353_22505 0.12 +0.1 4,936,768 + AO353_22505 0.24 -1.7 4,936,768 + AO353_22505 0.24 -0.6 4,936,768 + AO353_22505 0.24 +0.2 4,936,768 + AO353_22505 0.24 +0.5 4,936,768 + AO353_22505 0.24 -0.0 4,936,768 + AO353_22505 0.24 +1.7 4,936,769 - AO353_22505 0.24 +0.0 4,936,769 - AO353_22505 0.24 -0.9 4,936,776 + AO353_22505 0.26 -0.7 4,936,776 + AO353_22505 0.26 +0.6 4,936,777 - AO353_22505 0.26 -0.1 4,936,797 + AO353_22505 0.32 +1.5 4,936,797 + AO353_22505 0.32 -0.8 4,936,797 + AO353_22505 0.32 +0.5 4,936,797 + AO353_22505 0.32 -2.4 4,936,797 + AO353_22505 0.32 -0.9 4,936,798 - AO353_22505 0.32 +0.1 4,936,798 - AO353_22505 0.32 -0.3 4,936,798 - AO353_22505 0.32 +0.1 4,936,800 + AO353_22505 0.33 +0.6 4,936,801 - AO353_22505 0.33 -1.0 4,936,801 - AO353_22505 0.33 -1.7 4,936,801 - AO353_22505 0.33 +0.8 4,936,830 + AO353_22505 0.41 +0.0 4,936,935 + AO353_22505 0.71 +1.1 4,936,935 + AO353_22505 0.71 -0.1 4,937,053 + -0.1 4,937,054 - +0.5 4,937,054 - +2.2 4,937,054 - +0.2 4,937,054 - -0.9 4,937,078 - +0.1 4,937,209 + -1.4 4,937,209 + -0.5 4,937,209 + +0.8 4,937,209 + +0.6 4,937,254 + +0.2 4,937,254 + +0.3 4,937,254 + -1.1 4,937,254 + +0.5 4,937,257 + +0.1 4,937,257 + +0.6 4,937,427 + +0.9 4,937,428 - +1.2 4,937,428 - -1.1 4,937,500 - AO353_22510 0.31 -2.0 4,937,598 + AO353_22510 0.82 -1.0 4,937,598 + AO353_22510 0.82 -0.9 4,937,599 - AO353_22510 0.83 -1.3 4,937,599 - AO353_22510 0.83 +0.3 4,937,599 - AO353_22510 0.83 -1.5 4,937,610 + AO353_22510 0.89 -1.9 4,937,610 + AO353_22510 0.89 +0.6 4,937,610 + AO353_22510 0.89 -0.4 4,937,611 - AO353_22510 0.89 -0.9 4,937,646 + +3.0 4,937,647 - -0.0 4,937,677 + -0.7 4,937,701 + -0.3 4,937,701 + +0.9 4,937,713 + -0.4 4,937,758 + +1.5 4,937,951 - AO353_22515 0.17 +0.3 4,937,951 - AO353_22515 0.17 +0.1 4,937,951 - AO353_22515 0.17 -0.4 4,938,002 - AO353_22515 0.22 -0.9 4,938,028 + AO353_22515 0.24 -0.1 4,938,432 - AO353_22515 0.61 -1.3
Or see this region's nucleotide sequence