Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03430 and AO353_03435 are separated by 75 nucleotides AO353_03435 and AO353_03440 are separated by 118 nucleotides AO353_03440 and AO353_03445 are separated by 120 nucleotides
AO353_03430: AO353_03430 - methylglyoxal synthase, at 731,878 to 732,342
_03430
AO353_03435: AO353_03435 - RNA polymerase subunit sigma-24, at 732,418 to 732,936
_03435
AO353_03440: AO353_03440 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 733,055 to 734,026
_03440
AO353_03445: AO353_03445 - TonB-dependent receptor, at 734,147 to 736,711
_03445
Position (kb) 733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 732.259 kb on + strand, within AO353_03430 at 732.259 kb on + strand, within AO353_03430 at 732.260 kb on - strand, within AO353_03430 at 732.260 kb on - strand, within AO353_03430 at 732.260 kb on - strand, within AO353_03430 at 732.322 kb on + strand at 732.323 kb on - strand at 732.340 kb on + strand at 732.340 kb on + strand at 732.341 kb on - strand at 732.414 kb on + strand at 732.414 kb on + strand at 732.414 kb on + strand at 732.414 kb on + strand at 732.415 kb on - strand at 732.415 kb on - strand at 732.415 kb on - strand at 732.532 kb on + strand, within AO353_03435 at 732.532 kb on + strand, within AO353_03435 at 732.532 kb on + strand, within AO353_03435 at 732.532 kb on + strand, within AO353_03435 at 732.532 kb on + strand at 732.532 kb on + strand, within AO353_03435 at 732.554 kb on + strand, within AO353_03435 at 732.555 kb on - strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.826 kb on + strand, within AO353_03435 at 732.827 kb on - strand, within AO353_03435 at 732.827 kb on - strand, within AO353_03435 at 732.827 kb on - strand, within AO353_03435 at 732.827 kb on - strand, within AO353_03435 at 732.827 kb on - strand, within AO353_03435 at 732.950 kb on + strand at 732.950 kb on + strand at 732.950 kb on + strand at 732.950 kb on + strand at 732.950 kb on + strand at 732.951 kb on - strand at 732.951 kb on - strand at 732.951 kb on - strand at 733.478 kb on - strand, within AO353_03440 at 733.532 kb on + strand, within AO353_03440 at 733.533 kb on - strand, within AO353_03440 at 733.547 kb on + strand, within AO353_03440 at 733.547 kb on + strand, within AO353_03440 at 733.547 kb on + strand, within AO353_03440 at 733.547 kb on + strand, within AO353_03440 at 733.548 kb on - strand, within AO353_03440 at 733.548 kb on - strand, within AO353_03440 at 733.548 kb on - strand, within AO353_03440 at 733.548 kb on - strand, within AO353_03440 at 733.641 kb on - strand, within AO353_03440 at 733.754 kb on - strand, within AO353_03440 at 733.754 kb on - strand, within AO353_03440 at 733.754 kb on - strand, within AO353_03440 at 733.927 kb on + strand, within AO353_03440 at 733.931 kb on + strand at 733.931 kb on + strand at 733.931 kb on + strand at 733.931 kb on + strand at 733.931 kb on + strand at 733.931 kb on + strand at 733.932 kb on - strand at 733.932 kb on - strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.116 kb on + strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.117 kb on - strand at 734.118 kb on + strand at 734.118 kb on + strand at 734.118 kb on + strand at 734.118 kb on + strand at 734.118 kb on + strand at 734.118 kb on + strand at 734.119 kb on - strand at 734.119 kb on - strand at 734.119 kb on - strand at 734.119 kb on - strand at 734.119 kb on - strand at 734.269 kb on + strand at 734.282 kb on + strand at 734.283 kb on - strand at 734.283 kb on - strand at 734.400 kb on + strand at 734.400 kb on + strand at 734.401 kb on - strand at 734.401 kb on - strand at 734.401 kb on - strand at 734.709 kb on - strand, within AO353_03445 at 734.709 kb on - strand, within AO353_03445 at 734.709 kb on - strand, within AO353_03445 at 734.713 kb on + strand, within AO353_03445 at 734.714 kb on - strand, within AO353_03445 at 734.714 kb on - strand, within AO353_03445 at 734.714 kb on - strand, within AO353_03445 at 734.793 kb on - strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.813 kb on + strand, within AO353_03445 at 734.814 kb on - strand, within AO353_03445 at 734.814 kb on - strand, within AO353_03445 at 734.814 kb on - strand, within AO353_03445 at 734.814 kb on - strand, within AO353_03445 at 734.814 kb on - strand, within AO353_03445 at 734.873 kb on + strand, within AO353_03445 at 734.906 kb on + strand, within AO353_03445
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 732,259 + AO353_03430 0.82 +0.4 732,259 + AO353_03430 0.82 -0.5 732,260 - AO353_03430 0.82 -0.7 732,260 - AO353_03430 0.82 -1.5 732,260 - AO353_03430 0.82 -1.3 732,322 + +0.6 732,323 - +0.6 732,340 + +0.0 732,340 + -0.2 732,341 - +0.3 732,414 + -0.4 732,414 + -0.3 732,414 + -0.5 732,414 + -0.9 732,415 - +0.9 732,415 - -0.3 732,415 - +0.0 732,532 + AO353_03435 0.22 -1.5 732,532 + AO353_03435 0.22 -1.3 732,532 + AO353_03435 0.22 -1.5 732,532 + AO353_03435 0.22 -2.1 732,532 + +0.3 732,532 + AO353_03435 0.22 +0.3 732,554 + AO353_03435 0.26 +0.3 732,555 - AO353_03435 0.26 +0.5 732,826 + AO353_03435 0.79 +0.3 732,826 + AO353_03435 0.79 +0.7 732,826 + AO353_03435 0.79 -0.9 732,826 + AO353_03435 0.79 +0.4 732,826 + AO353_03435 0.79 -0.2 732,826 + AO353_03435 0.79 +0.7 732,826 + AO353_03435 0.79 -0.7 732,826 + AO353_03435 0.79 -0.0 732,827 - AO353_03435 0.79 +0.4 732,827 - AO353_03435 0.79 -0.3 732,827 - AO353_03435 0.79 -0.5 732,827 - AO353_03435 0.79 -0.5 732,827 - AO353_03435 0.79 -0.4 732,950 + +0.0 732,950 + +1.9 732,950 + -0.7 732,950 + +0.0 732,950 + +0.3 732,951 - +0.9 732,951 - +0.2 732,951 - -2.3 733,478 - AO353_03440 0.44 -0.6 733,532 + AO353_03440 0.49 -1.1 733,533 - AO353_03440 0.49 -0.6 733,547 + AO353_03440 0.51 +0.5 733,547 + AO353_03440 0.51 -0.6 733,547 + AO353_03440 0.51 -0.5 733,547 + AO353_03440 0.51 -0.6 733,548 - AO353_03440 0.51 -0.1 733,548 - AO353_03440 0.51 -1.3 733,548 - AO353_03440 0.51 -1.2 733,548 - AO353_03440 0.51 -0.1 733,641 - AO353_03440 0.60 -1.0 733,754 - AO353_03440 0.72 -1.1 733,754 - AO353_03440 0.72 +0.0 733,754 - AO353_03440 0.72 -0.3 733,927 + AO353_03440 0.90 +0.6 733,931 + -0.2 733,931 + +0.2 733,931 + -0.6 733,931 + +1.0 733,931 + +2.6 733,931 + +1.5 733,932 - -0.9 733,932 - +1.3 734,116 + +0.3 734,116 + +0.9 734,116 + +0.9 734,116 + +0.0 734,116 + +0.6 734,116 + -0.1 734,116 + +1.2 734,116 + +0.7 734,116 + -1.5 734,116 + -0.1 734,117 - -0.5 734,117 - +1.3 734,117 - +0.2 734,117 - -0.3 734,117 - -0.7 734,117 - -0.7 734,117 - -1.1 734,117 - +0.1 734,117 - -1.1 734,117 - -0.3 734,117 - -1.1 734,117 - +0.4 734,118 + -1.1 734,118 + +0.9 734,118 + -0.3 734,118 + +0.6 734,118 + +0.1 734,118 + -0.1 734,119 - +0.7 734,119 - -0.7 734,119 - -0.6 734,119 - -0.9 734,119 - +0.0 734,269 + +1.7 734,282 + +0.1 734,283 - +1.6 734,283 - +1.9 734,400 + +0.4 734,400 + +1.2 734,401 - -1.1 734,401 - +0.0 734,401 - -0.1 734,709 - AO353_03445 0.22 +0.7 734,709 - AO353_03445 0.22 +0.5 734,709 - AO353_03445 0.22 -1.2 734,713 + AO353_03445 0.22 +1.9 734,714 - AO353_03445 0.22 -0.7 734,714 - AO353_03445 0.22 +0.1 734,714 - AO353_03445 0.22 -1.1 734,793 - AO353_03445 0.25 +0.9 734,813 + AO353_03445 0.26 +0.6 734,813 + AO353_03445 0.26 -1.1 734,813 + AO353_03445 0.26 +0.9 734,813 + AO353_03445 0.26 +1.3 734,813 + AO353_03445 0.26 +0.8 734,813 + AO353_03445 0.26 -0.5 734,813 + AO353_03445 0.26 +1.4 734,813 + AO353_03445 0.26 +0.5 734,813 + AO353_03445 0.26 +0.6 734,814 - AO353_03445 0.26 -0.6 734,814 - AO353_03445 0.26 -0.1 734,814 - AO353_03445 0.26 +0.9 734,814 - AO353_03445 0.26 -0.2 734,814 - AO353_03445 0.26 +0.1 734,873 + AO353_03445 0.28 +0.4 734,906 + AO353_03445 0.30 +0.9
Or see this region's nucleotide sequence