Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2662

Experiment: 8 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2661 and DvMF_2662 are separated by 331 nucleotidesDvMF_2662 and DvMF_2663 are separated by 315 nucleotides DvMF_2661: DvMF_2661 - metal dependent phosphohydrolase (RefSeq), at 3,360,927 to 3,361,910 _2661 DvMF_2662: DvMF_2662 - metal dependent phosphohydrolase (RefSeq), at 3,362,242 to 3,363,258 _2662 DvMF_2663: DvMF_2663 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,363,574 to 3,365,157 _2663 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3361.360 kb on - strand, within DvMF_2661at 3361.360 kb on - strand, within DvMF_2661at 3361.600 kb on + strand, within DvMF_2661at 3361.637 kb on - strand, within DvMF_2661at 3361.881 kb on + strandat 3361.894 kb on + strandat 3361.961 kb on + strandat 3362.079 kb on - strandat 3362.163 kb on + strandat 3362.168 kb on + strandat 3362.289 kb on + strandat 3362.426 kb on + strand, within DvMF_2662at 3362.427 kb on - strand, within DvMF_2662at 3362.585 kb on + strand, within DvMF_2662at 3362.598 kb on - strand, within DvMF_2662at 3362.653 kb on + strand, within DvMF_2662at 3362.722 kb on + strand, within DvMF_2662at 3362.723 kb on + strand, within DvMF_2662at 3362.723 kb on - strand, within DvMF_2662at 3362.723 kb on - strand, within DvMF_2662at 3362.741 kb on + strand, within DvMF_2662at 3362.749 kb on - strand, within DvMF_2662at 3362.776 kb on - strand, within DvMF_2662at 3363.047 kb on - strand, within DvMF_2662at 3363.349 kb on - strandat 3363.420 kb on + strandat 3363.420 kb on + strandat 3363.428 kb on - strandat 3363.452 kb on - strandat 3363.533 kb on - strandat 3363.601 kb on - strandat 3363.662 kb on - strandat 3363.715 kb on + strandat 3363.797 kb on - strand, within DvMF_2663at 3363.821 kb on - strand, within DvMF_2663at 3364.255 kb on - strand, within DvMF_2663at 3364.256 kb on + strand, within DvMF_2663

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
remove
3,361,360 - DvMF_2661 0.44 +0.6
3,361,360 - DvMF_2661 0.44 +0.6
3,361,600 + DvMF_2661 0.68 +0.4
3,361,637 - DvMF_2661 0.72 -2.3
3,361,881 + -0.8
3,361,894 + +1.0
3,361,961 + +2.8
3,362,079 - +0.7
3,362,163 + -0.4
3,362,168 + -0.0
3,362,289 + +1.0
3,362,426 + DvMF_2662 0.18 +0.1
3,362,427 - DvMF_2662 0.18 +0.8
3,362,585 + DvMF_2662 0.34 +2.0
3,362,598 - DvMF_2662 0.35 +1.1
3,362,653 + DvMF_2662 0.40 +1.5
3,362,722 + DvMF_2662 0.47 +0.4
3,362,723 + DvMF_2662 0.47 +0.5
3,362,723 - DvMF_2662 0.47 +0.7
3,362,723 - DvMF_2662 0.47 +1.4
3,362,741 + DvMF_2662 0.49 +1.0
3,362,749 - DvMF_2662 0.50 +0.6
3,362,776 - DvMF_2662 0.53 +0.9
3,363,047 - DvMF_2662 0.79 +1.2
3,363,349 - +0.3
3,363,420 + +0.6
3,363,420 + +0.5
3,363,428 - +0.6
3,363,452 - +1.0
3,363,533 - +1.4
3,363,601 - +0.3
3,363,662 - +0.3
3,363,715 + -0.3
3,363,797 - DvMF_2663 0.14 +1.3
3,363,821 - DvMF_2663 0.16 -0.1
3,364,255 - DvMF_2663 0.43 +0.5
3,364,256 + DvMF_2663 0.43 +0.2

Or see this region's nucleotide sequence