Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2640

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2639 and DvMF_2640 are separated by 262 nucleotidesDvMF_2640 and DvMF_2641 are separated by 247 nucleotidesDvMF_2641 and DvMF_2642 are separated by 175 nucleotides DvMF_2639: DvMF_2639 - hypothetical protein (RefSeq), at 3,337,135 to 3,337,593 _2639 DvMF_2640: DvMF_2640 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,337,856 to 3,340,723 _2640 DvMF_2641: DvMF_2641 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 3,340,971 to 3,341,144 _2641 DvMF_2642: DvMF_2642 - hypothetical protein (RefSeq), at 3,341,320 to 3,342,693 _2642 Position (kb) 3337 3338 3339 3340 3341Strain fitness (log2 ratio) -1 0 1at 3336.900 kb on - strandat 3337.006 kb on + strandat 3337.238 kb on - strand, within DvMF_2639at 3337.253 kb on - strand, within DvMF_2639at 3337.271 kb on - strand, within DvMF_2639at 3337.302 kb on - strand, within DvMF_2639at 3338.012 kb on + strandat 3338.013 kb on - strandat 3338.183 kb on + strand, within DvMF_2640at 3338.190 kb on + strand, within DvMF_2640at 3338.323 kb on + strand, within DvMF_2640at 3338.563 kb on - strand, within DvMF_2640at 3338.707 kb on - strand, within DvMF_2640at 3338.754 kb on + strand, within DvMF_2640at 3338.804 kb on - strand, within DvMF_2640at 3338.954 kb on + strand, within DvMF_2640at 3339.136 kb on - strand, within DvMF_2640at 3339.206 kb on + strand, within DvMF_2640at 3339.214 kb on - strand, within DvMF_2640at 3339.579 kb on - strand, within DvMF_2640at 3339.579 kb on - strand, within DvMF_2640at 3339.740 kb on + strand, within DvMF_2640at 3339.905 kb on + strand, within DvMF_2640at 3340.001 kb on + strand, within DvMF_2640at 3340.204 kb on + strand, within DvMF_2640at 3340.254 kb on - strand, within DvMF_2640at 3340.349 kb on + strand, within DvMF_2640at 3340.349 kb on + strand, within DvMF_2640at 3340.429 kb on + strand, within DvMF_2640at 3340.759 kb on + strandat 3341.216 kb on + strandat 3341.414 kb on + strandat 3341.482 kb on + strand, within DvMF_2642at 3341.688 kb on + strand, within DvMF_2642at 3341.695 kb on - strand, within DvMF_2642

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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3,336,900 - +0.9
3,337,006 + +1.2
3,337,238 - DvMF_2639 0.22 +0.1
3,337,253 - DvMF_2639 0.26 -0.0
3,337,271 - DvMF_2639 0.30 +0.4
3,337,302 - DvMF_2639 0.36 +0.5
3,338,012 + -0.0
3,338,013 - -0.3
3,338,183 + DvMF_2640 0.11 -0.0
3,338,190 + DvMF_2640 0.12 +1.2
3,338,323 + DvMF_2640 0.16 -0.4
3,338,563 - DvMF_2640 0.25 -0.2
3,338,707 - DvMF_2640 0.30 -0.9
3,338,754 + DvMF_2640 0.31 -0.6
3,338,804 - DvMF_2640 0.33 -0.6
3,338,954 + DvMF_2640 0.38 -0.3
3,339,136 - DvMF_2640 0.45 -0.8
3,339,206 + DvMF_2640 0.47 -0.4
3,339,214 - DvMF_2640 0.47 -0.5
3,339,579 - DvMF_2640 0.60 -0.9
3,339,579 - DvMF_2640 0.60 +0.1
3,339,740 + DvMF_2640 0.66 +0.2
3,339,905 + DvMF_2640 0.71 +1.0
3,340,001 + DvMF_2640 0.75 +0.5
3,340,204 + DvMF_2640 0.82 -0.4
3,340,254 - DvMF_2640 0.84 +0.4
3,340,349 + DvMF_2640 0.87 -0.3
3,340,349 + DvMF_2640 0.87 -0.3
3,340,429 + DvMF_2640 0.90 -0.5
3,340,759 + +0.2
3,341,216 + -0.1
3,341,414 + +0.3
3,341,482 + DvMF_2642 0.12 +0.1
3,341,688 + DvMF_2642 0.27 +1.1
3,341,695 - DvMF_2642 0.27 +0.6

Or see this region's nucleotide sequence