Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2638

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2637 and DvMF_2638 are separated by 36 nucleotidesDvMF_2638 and DvMF_2639 are separated by 540 nucleotides DvMF_2637: DvMF_2637 - diguanylate cyclase with extracellular sensor (RefSeq), at 3,333,700 to 3,335,124 _2637 DvMF_2638: DvMF_2638 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 3,335,161 to 3,336,594 _2638 DvMF_2639: DvMF_2639 - hypothetical protein (RefSeq), at 3,337,135 to 3,337,593 _2639 Position (kb) 3335 3336 3337Strain fitness (log2 ratio) -1 0 1at 3334.211 kb on + strand, within DvMF_2637at 3334.230 kb on + strand, within DvMF_2637at 3334.238 kb on - strand, within DvMF_2637at 3334.450 kb on + strand, within DvMF_2637at 3334.458 kb on - strand, within DvMF_2637at 3334.633 kb on + strand, within DvMF_2637at 3334.641 kb on - strand, within DvMF_2637at 3334.980 kb on + strand, within DvMF_2637at 3334.980 kb on + strand, within DvMF_2637at 3334.997 kb on + strandat 3335.061 kb on - strandat 3335.074 kb on + strandat 3335.082 kb on - strandat 3335.082 kb on - strandat 3335.082 kb on - strandat 3335.082 kb on - strandat 3335.305 kb on + strand, within DvMF_2638at 3335.464 kb on + strand, within DvMF_2638at 3335.464 kb on + strand, within DvMF_2638at 3335.725 kb on + strand, within DvMF_2638at 3335.751 kb on + strand, within DvMF_2638at 3335.818 kb on - strand, within DvMF_2638at 3335.956 kb on + strand, within DvMF_2638at 3336.286 kb on - strand, within DvMF_2638at 3336.375 kb on + strand, within DvMF_2638at 3336.422 kb on - strand, within DvMF_2638at 3336.618 kb on + strandat 3336.673 kb on + strandat 3336.742 kb on - strandat 3336.900 kb on - strandat 3337.006 kb on + strandat 3337.238 kb on - strand, within DvMF_2639at 3337.253 kb on - strand, within DvMF_2639at 3337.271 kb on - strand, within DvMF_2639at 3337.302 kb on - strand, within DvMF_2639

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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3,334,211 + DvMF_2637 0.36 +0.4
3,334,230 + DvMF_2637 0.37 +0.5
3,334,238 - DvMF_2637 0.38 +0.5
3,334,450 + DvMF_2637 0.53 -0.1
3,334,458 - DvMF_2637 0.53 +0.7
3,334,633 + DvMF_2637 0.65 +0.4
3,334,641 - DvMF_2637 0.66 -0.4
3,334,980 + DvMF_2637 0.90 +0.6
3,334,980 + DvMF_2637 0.90 +0.2
3,334,997 + +0.8
3,335,061 - +0.7
3,335,074 + +0.3
3,335,082 - +0.7
3,335,082 - +0.5
3,335,082 - +0.2
3,335,082 - +0.6
3,335,305 + DvMF_2638 0.10 -0.0
3,335,464 + DvMF_2638 0.21 +0.6
3,335,464 + DvMF_2638 0.21 +0.6
3,335,725 + DvMF_2638 0.39 +1.0
3,335,751 + DvMF_2638 0.41 +0.6
3,335,818 - DvMF_2638 0.46 +0.5
3,335,956 + DvMF_2638 0.55 +1.0
3,336,286 - DvMF_2638 0.78 +0.5
3,336,375 + DvMF_2638 0.85 -0.1
3,336,422 - DvMF_2638 0.88 +0.5
3,336,618 + +0.5
3,336,673 + +0.4
3,336,742 - +0.1
3,336,900 - +0.9
3,337,006 + +1.2
3,337,238 - DvMF_2639 0.22 +0.1
3,337,253 - DvMF_2639 0.26 -0.0
3,337,271 - DvMF_2639 0.30 +0.4
3,337,302 - DvMF_2639 0.36 +0.5

Or see this region's nucleotide sequence