Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2386

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2385 and DvMF_2386 overlap by 8 nucleotidesDvMF_2386 and DvMF_2387 are separated by 704 nucleotides DvMF_2385: DvMF_2385 - Nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 3,014,115 to 3,015,689 _2385 DvMF_2386: DvMF_2386 - cytochrome c nitrite reductase small subunit (RefSeq), at 3,015,682 to 3,016,158 _2386 DvMF_2387: DvMF_2387 - glutamate synthase (NADPH) (RefSeq), at 3,016,863 to 3,017,990 _2387 Position (kb) 3015 3016 3017Strain fitness (log2 ratio) -1 0 1 2at 3014.683 kb on - strand, within DvMF_2385at 3014.831 kb on + strand, within DvMF_2385at 3014.937 kb on + strand, within DvMF_2385at 3014.967 kb on + strand, within DvMF_2385at 3015.101 kb on - strand, within DvMF_2385at 3015.273 kb on + strand, within DvMF_2385at 3015.478 kb on - strand, within DvMF_2385at 3015.478 kb on - strand, within DvMF_2385at 3015.708 kb on - strandat 3015.838 kb on - strand, within DvMF_2386at 3015.893 kb on - strand, within DvMF_2386at 3016.052 kb on - strand, within DvMF_2386at 3016.063 kb on - strand, within DvMF_2386at 3016.063 kb on - strand, within DvMF_2386at 3016.293 kb on - strandat 3016.591 kb on + strandat 3017.085 kb on - strand, within DvMF_2387

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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3,014,683 - DvMF_2385 0.36 +1.2
3,014,831 + DvMF_2385 0.45 +0.6
3,014,937 + DvMF_2385 0.52 +1.2
3,014,967 + DvMF_2385 0.54 +0.2
3,015,101 - DvMF_2385 0.63 +0.0
3,015,273 + DvMF_2385 0.74 +2.2
3,015,478 - DvMF_2385 0.87 +0.6
3,015,478 - DvMF_2385 0.87 +0.6
3,015,708 - +0.3
3,015,838 - DvMF_2386 0.33 +0.3
3,015,893 - DvMF_2386 0.44 +1.1
3,016,052 - DvMF_2386 0.78 +0.4
3,016,063 - DvMF_2386 0.80 +0.6
3,016,063 - DvMF_2386 0.80 +1.7
3,016,293 - +0.9
3,016,591 + +0.1
3,017,085 - DvMF_2387 0.20 +0.9

Or see this region's nucleotide sequence