Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2263

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2262 and engA are separated by 280 nucleotidesengA and DvMF_2264 are separated by 550 nucleotides DvMF_2262: DvMF_2262 - hypothetical protein (RefSeq), at 2,841,338 to 2,842,216 _2262 DvMF_2263: engA - GTP-binding protein EngA (RefSeq), at 2,842,497 to 2,844,017 engA DvMF_2264: DvMF_2264 - DNA binding domain protein, excisionase family (RefSeq), at 2,844,568 to 2,845,554 _2264 Position (kb) 2842 2843 2844 2845Strain fitness (log2 ratio) -1 0 1 2at 2841.512 kb on + strand, within DvMF_2262at 2841.613 kb on + strand, within DvMF_2262at 2841.621 kb on - strand, within DvMF_2262at 2841.699 kb on - strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.762 kb on - strand, within DvMF_2262at 2841.762 kb on - strand, within DvMF_2262at 2841.813 kb on + strand, within DvMF_2262at 2841.939 kb on - strand, within DvMF_2262at 2842.002 kb on - strand, within DvMF_2262at 2842.369 kb on - strandat 2842.429 kb on + strandat 2842.484 kb on + strandat 2844.086 kb on - strandat 2844.091 kb on - strandat 2844.118 kb on - strandat 2844.122 kb on + strandat 2844.692 kb on - strand, within DvMF_2264at 2844.828 kb on - strand, within DvMF_2264at 2844.840 kb on + strand, within DvMF_2264at 2844.918 kb on - strand, within DvMF_2264at 2844.943 kb on - strand, within DvMF_2264at 2844.944 kb on - strand, within DvMF_2264

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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2,841,512 + DvMF_2262 0.20 +0.9
2,841,613 + DvMF_2262 0.31 +0.7
2,841,621 - DvMF_2262 0.32 +0.9
2,841,699 - DvMF_2262 0.41 +1.8
2,841,754 + DvMF_2262 0.47 +0.7
2,841,754 + DvMF_2262 0.47 +0.5
2,841,754 + DvMF_2262 0.47 +0.6
2,841,754 + DvMF_2262 0.47 +0.7
2,841,762 - DvMF_2262 0.48 +0.9
2,841,762 - DvMF_2262 0.48 +0.6
2,841,813 + DvMF_2262 0.54 +1.0
2,841,939 - DvMF_2262 0.68 +0.7
2,842,002 - DvMF_2262 0.76 +0.8
2,842,369 - +0.3
2,842,429 + +0.9
2,842,484 + +0.7
2,844,086 - +0.6
2,844,091 - +0.2
2,844,118 - +0.8
2,844,122 + -0.8
2,844,692 - DvMF_2264 0.13 +1.5
2,844,828 - DvMF_2264 0.26 +0.4
2,844,840 + DvMF_2264 0.28 +0.1
2,844,918 - DvMF_2264 0.35 +0.6
2,844,943 - DvMF_2264 0.38 +0.5
2,844,944 - DvMF_2264 0.38 +1.5

Or see this region's nucleotide sequence