Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1776

Experiment: 8 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1775 and DvMF_1776 are separated by 415 nucleotidesDvMF_1776 and DvMF_1777 are separated by 97 nucleotides DvMF_1775: DvMF_1775 - acetate/CoA ligase (RefSeq), at 2,171,029 to 2,173,032 _1775 DvMF_1776: DvMF_1776 - GCN5-related N-acetyltransferase (RefSeq), at 2,173,448 to 2,176,144 _1776 DvMF_1777: DvMF_1777 - prophage PSPPH06, putative reverse transcriptase/maturase (RefSeq), at 2,176,242 to 2,177,597 _1777 Position (kb) 2173 2174 2175 2176 2177Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2172.571 kb on + strand, within DvMF_1775at 2172.579 kb on - strand, within DvMF_1775at 2172.781 kb on - strand, within DvMF_1775at 2172.795 kb on + strand, within DvMF_1775at 2172.916 kb on - strandat 2173.125 kb on - strandat 2173.156 kb on + strandat 2173.327 kb on + strandat 2173.429 kb on + strandat 2173.558 kb on + strandat 2173.605 kb on + strandat 2173.830 kb on - strand, within DvMF_1776at 2173.969 kb on + strand, within DvMF_1776at 2173.969 kb on + strand, within DvMF_1776at 2174.077 kb on - strand, within DvMF_1776at 2174.257 kb on - strand, within DvMF_1776at 2174.308 kb on + strand, within DvMF_1776at 2174.350 kb on - strand, within DvMF_1776at 2174.399 kb on - strand, within DvMF_1776at 2174.499 kb on + strand, within DvMF_1776at 2174.673 kb on + strand, within DvMF_1776at 2174.933 kb on - strand, within DvMF_1776at 2174.943 kb on - strand, within DvMF_1776at 2174.994 kb on - strand, within DvMF_1776at 2175.033 kb on + strand, within DvMF_1776at 2175.119 kb on + strand, within DvMF_1776at 2175.134 kb on + strand, within DvMF_1776at 2175.192 kb on + strand, within DvMF_1776at 2175.200 kb on - strand, within DvMF_1776at 2175.302 kb on - strand, within DvMF_1776at 2175.451 kb on + strand, within DvMF_1776at 2175.618 kb on + strand, within DvMF_1776at 2175.635 kb on + strand, within DvMF_1776

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
remove
2,172,571 + DvMF_1775 0.77 -2.1
2,172,579 - DvMF_1775 0.77 -2.0
2,172,781 - DvMF_1775 0.87 -1.5
2,172,795 + DvMF_1775 0.88 -2.1
2,172,916 - -1.8
2,173,125 - +0.1
2,173,156 + -0.2
2,173,327 + +0.8
2,173,429 + +0.6
2,173,558 + -4.7
2,173,605 + -4.0
2,173,830 - DvMF_1776 0.14 -5.1
2,173,969 + DvMF_1776 0.19 -6.7
2,173,969 + DvMF_1776 0.19 -4.6
2,174,077 - DvMF_1776 0.23 -5.5
2,174,257 - DvMF_1776 0.30 -3.9
2,174,308 + DvMF_1776 0.32 -6.9
2,174,350 - DvMF_1776 0.33 -3.6
2,174,399 - DvMF_1776 0.35 -5.2
2,174,499 + DvMF_1776 0.39 -6.6
2,174,673 + DvMF_1776 0.45 -3.4
2,174,933 - DvMF_1776 0.55 -5.3
2,174,943 - DvMF_1776 0.55 -4.6
2,174,994 - DvMF_1776 0.57 -5.2
2,175,033 + DvMF_1776 0.59 -4.9
2,175,119 + DvMF_1776 0.62 -6.1
2,175,134 + DvMF_1776 0.63 -1.7
2,175,192 + DvMF_1776 0.65 -6.1
2,175,200 - DvMF_1776 0.65 -4.7
2,175,302 - DvMF_1776 0.69 -4.7
2,175,451 + DvMF_1776 0.74 -5.0
2,175,618 + DvMF_1776 0.80 -5.5
2,175,635 + DvMF_1776 0.81 -6.0

Or see this region's nucleotide sequence