Experiment: 8 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1668 and DvMF_1669 are separated by 10 nucleotides DvMF_1669 and DvMF_1670 are separated by 8 nucleotides DvMF_1670 and DvMF_1671 are separated by 170 nucleotides DvMF_1671 and DvMF_1672 overlap by 4 nucleotides
DvMF_1668: DvMF_1668 - plasmid maintenance system killer (RefSeq), at 2,041,542 to 2,041,820
_1668
DvMF_1669: DvMF_1669 - plasmid maintenance system antidote protein, XRE family (RefSeq), at 2,041,831 to 2,042,136
_1669
DvMF_1670: DvMF_1670 - hypothetical protein (RefSeq), at 2,042,145 to 2,042,438
_1670
DvMF_1671: DvMF_1671 - hypothetical protein (RefSeq), at 2,042,609 to 2,043,241
_1671
DvMF_1672: DvMF_1672 - hypothetical protein (RefSeq), at 2,043,238 to 2,044,095
_1672
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-1
0
1 at 2041.706 kb on + strand, within DvMF_1668 at 2042.116 kb on - strand at 2042.117 kb on + strand at 2042.233 kb on + strand, within DvMF_1670 at 2042.309 kb on - strand, within DvMF_1670 at 2042.525 kb on - strand at 2042.833 kb on + strand, within DvMF_1671 at 2043.129 kb on - strand, within DvMF_1671 at 2043.164 kb on + strand, within DvMF_1671 at 2043.191 kb on - strand at 2043.231 kb on + strand at 2043.244 kb on - strand at 2043.284 kb on - strand at 2043.320 kb on + strand at 2043.327 kb on + strand, within DvMF_1672 at 2043.656 kb on - strand, within DvMF_1672 at 2043.935 kb on + strand, within DvMF_1672 at 2043.943 kb on - strand, within DvMF_1672 at 2044.034 kb on + strand at 2044.098 kb on - strand at 2044.132 kb on - strand at 2044.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 37C remove 2,041,706 + DvMF_1668 0.59 +0.5 2,042,116 - +0.7 2,042,117 + +0.5 2,042,233 + DvMF_1670 0.30 +1.5 2,042,309 - DvMF_1670 0.56 +1.0 2,042,525 - +0.4 2,042,833 + DvMF_1671 0.35 +0.6 2,043,129 - DvMF_1671 0.82 +0.6 2,043,164 + DvMF_1671 0.88 +1.4 2,043,191 - +0.4 2,043,231 + +0.6 2,043,244 - +0.5 2,043,284 - +0.7 2,043,320 + +0.7 2,043,327 + DvMF_1672 0.10 +0.9 2,043,656 - DvMF_1672 0.49 +0.8 2,043,935 + DvMF_1672 0.81 +0.5 2,043,943 - DvMF_1672 0.82 +1.0 2,044,034 + +0.4 2,044,098 - +0.1 2,044,132 - +0.5 2,044,193 + +0.8
Or see this region's nucleotide sequence