Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1671

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1668 and DvMF_1669 are separated by 10 nucleotidesDvMF_1669 and DvMF_1670 are separated by 8 nucleotidesDvMF_1670 and DvMF_1671 are separated by 170 nucleotidesDvMF_1671 and DvMF_1672 overlap by 4 nucleotides DvMF_1668: DvMF_1668 - plasmid maintenance system killer (RefSeq), at 2,041,542 to 2,041,820 _1668 DvMF_1669: DvMF_1669 - plasmid maintenance system antidote protein, XRE family (RefSeq), at 2,041,831 to 2,042,136 _1669 DvMF_1670: DvMF_1670 - hypothetical protein (RefSeq), at 2,042,145 to 2,042,438 _1670 DvMF_1671: DvMF_1671 - hypothetical protein (RefSeq), at 2,042,609 to 2,043,241 _1671 DvMF_1672: DvMF_1672 - hypothetical protein (RefSeq), at 2,043,238 to 2,044,095 _1672 Position (kb) 2042 2043 2044Strain fitness (log2 ratio) -1 0 1at 2041.706 kb on + strand, within DvMF_1668at 2042.116 kb on - strandat 2042.117 kb on + strandat 2042.233 kb on + strand, within DvMF_1670at 2042.309 kb on - strand, within DvMF_1670at 2042.525 kb on - strandat 2042.833 kb on + strand, within DvMF_1671at 2043.129 kb on - strand, within DvMF_1671at 2043.164 kb on + strand, within DvMF_1671at 2043.191 kb on - strandat 2043.231 kb on + strandat 2043.244 kb on - strandat 2043.284 kb on - strandat 2043.320 kb on + strandat 2043.327 kb on + strand, within DvMF_1672at 2043.656 kb on - strand, within DvMF_1672at 2043.935 kb on + strand, within DvMF_1672at 2043.943 kb on - strand, within DvMF_1672at 2044.034 kb on + strandat 2044.098 kb on - strandat 2044.132 kb on - strandat 2044.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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2,041,706 + DvMF_1668 0.59 +0.5
2,042,116 - +0.7
2,042,117 + +0.5
2,042,233 + DvMF_1670 0.30 +1.5
2,042,309 - DvMF_1670 0.56 +1.0
2,042,525 - +0.4
2,042,833 + DvMF_1671 0.35 +0.6
2,043,129 - DvMF_1671 0.82 +0.6
2,043,164 + DvMF_1671 0.88 +1.4
2,043,191 - +0.4
2,043,231 + +0.6
2,043,244 - +0.5
2,043,284 - +0.7
2,043,320 + +0.7
2,043,327 + DvMF_1672 0.10 +0.9
2,043,656 - DvMF_1672 0.49 +0.8
2,043,935 + DvMF_1672 0.81 +0.5
2,043,943 - DvMF_1672 0.82 +1.0
2,044,034 + +0.4
2,044,098 - +0.1
2,044,132 - +0.5
2,044,193 + +0.8

Or see this region's nucleotide sequence