Experiment: 8 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1639 and DvMF_1640 are separated by 38 nucleotides DvMF_1640 and DvMF_1641 are separated by 79 nucleotides DvMF_1641 and DvMF_1642 are separated by 2 nucleotides DvMF_1642 and DvMF_1643 are separated by 2 nucleotides
DvMF_1639: DvMF_1639 - Phage-related protein tail component-like protein (RefSeq), at 2,018,379 to 2,021,135
_1639
DvMF_1640: DvMF_1640 - hypothetical protein (RefSeq), at 2,021,174 to 2,021,533
_1640
DvMF_1641: DvMF_1641 - hypothetical protein (RefSeq), at 2,021,613 to 2,022,518
_1641
DvMF_1642: DvMF_1642 - hypothetical protein (RefSeq), at 2,022,521 to 2,022,874
_1642
DvMF_1643: DvMF_1643 - phage tape measure protein (RefSeq), at 2,022,877 to 2,025,693
_1643
Position (kb)
2021
2022
2023 Strain fitness (log2 ratio)
-1
0
1
2 at 2020.728 kb on - strand, within DvMF_1639 at 2020.826 kb on - strand, within DvMF_1639 at 2020.918 kb on + strand at 2020.981 kb on - strand at 2020.981 kb on - strand at 2021.008 kb on - strand at 2021.008 kb on - strand at 2021.034 kb on + strand at 2021.073 kb on - strand at 2021.148 kb on + strand at 2021.214 kb on - strand, within DvMF_1640 at 2021.346 kb on - strand, within DvMF_1640 at 2021.346 kb on - strand, within DvMF_1640 at 2021.374 kb on - strand, within DvMF_1640 at 2021.400 kb on + strand, within DvMF_1640 at 2021.462 kb on + strand, within DvMF_1640 at 2021.470 kb on - strand, within DvMF_1640 at 2021.509 kb on + strand at 2021.682 kb on - strand at 2021.810 kb on + strand, within DvMF_1641 at 2021.833 kb on - strand, within DvMF_1641 at 2021.904 kb on - strand, within DvMF_1641 at 2022.016 kb on + strand, within DvMF_1641 at 2022.024 kb on - strand, within DvMF_1641 at 2022.120 kb on + strand, within DvMF_1641 at 2022.138 kb on - strand, within DvMF_1641 at 2022.175 kb on - strand, within DvMF_1641 at 2022.175 kb on - strand, within DvMF_1641 at 2022.175 kb on - strand, within DvMF_1641 at 2022.186 kb on - strand, within DvMF_1641 at 2022.238 kb on - strand, within DvMF_1641 at 2022.258 kb on + strand, within DvMF_1641 at 2022.311 kb on - strand, within DvMF_1641 at 2022.334 kb on - strand, within DvMF_1641 at 2022.461 kb on + strand at 2022.514 kb on + strand at 2022.522 kb on - strand at 2022.549 kb on - strand at 2022.654 kb on + strand, within DvMF_1642 at 2022.908 kb on + strand at 2023.079 kb on - strand at 2023.230 kb on + strand, within DvMF_1643 at 2023.292 kb on + strand, within DvMF_1643 at 2023.315 kb on - strand, within DvMF_1643 at 2023.355 kb on + strand, within DvMF_1643
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 37C remove 2,020,728 - DvMF_1639 0.85 +0.6 2,020,826 - DvMF_1639 0.89 +1.2 2,020,918 + -0.1 2,020,981 - +0.2 2,020,981 - +0.3 2,021,008 - +0.9 2,021,008 - +0.5 2,021,034 + +0.8 2,021,073 - +1.7 2,021,148 + +0.4 2,021,214 - DvMF_1640 0.11 +0.4 2,021,346 - DvMF_1640 0.48 +1.0 2,021,346 - DvMF_1640 0.48 +0.8 2,021,374 - DvMF_1640 0.56 +0.7 2,021,400 + DvMF_1640 0.63 +0.8 2,021,462 + DvMF_1640 0.80 -0.2 2,021,470 - DvMF_1640 0.82 +0.5 2,021,509 + +0.8 2,021,682 - +0.1 2,021,810 + DvMF_1641 0.22 +0.3 2,021,833 - DvMF_1641 0.24 +1.3 2,021,904 - DvMF_1641 0.32 +0.7 2,022,016 + DvMF_1641 0.44 +1.3 2,022,024 - DvMF_1641 0.45 +1.0 2,022,120 + DvMF_1641 0.56 +0.9 2,022,138 - DvMF_1641 0.58 +0.7 2,022,175 - DvMF_1641 0.62 +1.0 2,022,175 - DvMF_1641 0.62 +0.5 2,022,175 - DvMF_1641 0.62 +0.9 2,022,186 - DvMF_1641 0.63 +1.5 2,022,238 - DvMF_1641 0.69 +1.4 2,022,258 + DvMF_1641 0.71 +1.1 2,022,311 - DvMF_1641 0.77 -0.1 2,022,334 - DvMF_1641 0.80 +1.0 2,022,461 + +0.5 2,022,514 + +0.3 2,022,522 - +0.6 2,022,549 - +0.7 2,022,654 + DvMF_1642 0.38 +0.4 2,022,908 + +2.0 2,023,079 - +0.8 2,023,230 + DvMF_1643 0.13 +1.0 2,023,292 + DvMF_1643 0.15 +1.6 2,023,315 - DvMF_1643 0.16 +0.5 2,023,355 + DvMF_1643 0.17 +0.4
Or see this region's nucleotide sequence