Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1474

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1473 and DvMF_1474 are separated by 726 nucleotidesDvMF_1474 and DvMF_1475 are separated by 524 nucleotides DvMF_1473: DvMF_1473 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 1,804,298 to 1,806,412 _1473 DvMF_1474: DvMF_1474 - flagellin domain protein (RefSeq), at 1,807,139 to 1,807,966 _1474 DvMF_1475: DvMF_1475 - hypothetical protein (RefSeq), at 1,808,491 to 1,808,943 _1475 Position (kb) 1807 1808Strain fitness (log2 ratio) -1 0 1 2at 1806.291 kb on + strandat 1806.349 kb on + strandat 1806.674 kb on - strandat 1806.837 kb on - strandat 1807.069 kb on + strandat 1807.262 kb on - strand, within DvMF_1474at 1807.455 kb on - strand, within DvMF_1474at 1807.477 kb on - strand, within DvMF_1474at 1807.708 kb on + strand, within DvMF_1474at 1807.708 kb on + strand, within DvMF_1474at 1807.708 kb on + strand, within DvMF_1474at 1807.865 kb on + strand, within DvMF_1474at 1807.873 kb on - strand, within DvMF_1474at 1807.968 kb on - strandat 1807.968 kb on - strandat 1808.035 kb on + strandat 1808.053 kb on - strandat 1808.065 kb on + strandat 1808.215 kb on - strandat 1808.384 kb on + strandat 1808.392 kb on - strandat 1808.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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1,806,291 + +0.3
1,806,349 + +0.5
1,806,674 - +0.7
1,806,837 - -0.3
1,807,069 + +0.4
1,807,262 - DvMF_1474 0.15 +1.2
1,807,455 - DvMF_1474 0.38 +2.0
1,807,477 - DvMF_1474 0.41 +1.0
1,807,708 + DvMF_1474 0.69 +0.5
1,807,708 + DvMF_1474 0.69 +1.0
1,807,708 + DvMF_1474 0.69 +0.5
1,807,865 + DvMF_1474 0.88 +0.4
1,807,873 - DvMF_1474 0.89 +0.3
1,807,968 - +1.2
1,807,968 - +0.7
1,808,035 + +0.9
1,808,053 - +0.9
1,808,065 + -0.1
1,808,215 - +0.6
1,808,384 + +0.1
1,808,392 - +0.9
1,808,446 - -0.1

Or see this region's nucleotide sequence