Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1325

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1324 and DvMF_1325 are separated by 207 nucleotidesDvMF_1325 and DvMF_1326 are separated by 236 nucleotides DvMF_1324: DvMF_1324 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 1,616,435 to 1,617,487 _1324 DvMF_1325: DvMF_1325 - TPR repeat-containing protein (RefSeq), at 1,617,695 to 1,621,063 _1325 DvMF_1326: DvMF_1326 - protein of unknown function DUF52 (RefSeq), at 1,621,300 to 1,622,148 _1326 Position (kb) 1617 1618 1619 1620 1621 1622Strain fitness (log2 ratio) -1 0 1 2at 1616.718 kb on + strand, within DvMF_1324at 1616.951 kb on + strand, within DvMF_1324at 1616.959 kb on - strand, within DvMF_1324at 1616.960 kb on - strand, within DvMF_1324at 1617.376 kb on + strand, within DvMF_1324at 1618.103 kb on + strand, within DvMF_1325at 1618.280 kb on - strand, within DvMF_1325at 1618.294 kb on - strand, within DvMF_1325at 1618.581 kb on - strand, within DvMF_1325at 1618.795 kb on + strand, within DvMF_1325at 1618.855 kb on + strand, within DvMF_1325at 1618.875 kb on - strand, within DvMF_1325at 1619.059 kb on + strand, within DvMF_1325at 1619.115 kb on - strand, within DvMF_1325at 1619.206 kb on + strand, within DvMF_1325at 1619.311 kb on + strand, within DvMF_1325at 1619.392 kb on + strand, within DvMF_1325at 1619.499 kb on - strand, within DvMF_1325at 1619.646 kb on - strand, within DvMF_1325at 1619.843 kb on - strand, within DvMF_1325at 1619.987 kb on + strand, within DvMF_1325at 1619.992 kb on + strand, within DvMF_1325at 1620.048 kb on + strand, within DvMF_1325at 1620.124 kb on + strand, within DvMF_1325at 1620.380 kb on - strand, within DvMF_1325at 1620.551 kb on - strand, within DvMF_1325at 1620.661 kb on - strand, within DvMF_1325at 1620.886 kb on - strandat 1621.011 kb on + strandat 1621.065 kb on - strandat 1621.208 kb on + strandat 1621.271 kb on - strandat 1621.444 kb on - strand, within DvMF_1326at 1621.510 kb on - strand, within DvMF_1326at 1621.539 kb on + strand, within DvMF_1326at 1621.547 kb on - strand, within DvMF_1326at 1621.706 kb on + strand, within DvMF_1326at 1621.714 kb on - strand, within DvMF_1326at 1621.714 kb on - strand, within DvMF_1326at 1621.714 kb on - strand, within DvMF_1326at 1621.750 kb on - strand, within DvMF_1326at 1621.785 kb on + strand, within DvMF_1326at 1621.835 kb on + strand, within DvMF_1326at 1621.958 kb on - strand, within DvMF_1326at 1622.028 kb on + strand, within DvMF_1326

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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1,616,718 + DvMF_1324 0.27 +1.9
1,616,951 + DvMF_1324 0.49 +2.1
1,616,959 - DvMF_1324 0.50 +2.2
1,616,960 - DvMF_1324 0.50 +2.0
1,617,376 + DvMF_1324 0.89 +2.1
1,618,103 + DvMF_1325 0.12 +1.4
1,618,280 - DvMF_1325 0.17 +0.7
1,618,294 - DvMF_1325 0.18 +1.1
1,618,581 - DvMF_1325 0.26 +1.0
1,618,795 + DvMF_1325 0.33 +1.3
1,618,855 + DvMF_1325 0.34 +0.8
1,618,875 - DvMF_1325 0.35 +1.3
1,619,059 + DvMF_1325 0.40 +1.5
1,619,115 - DvMF_1325 0.42 +1.2
1,619,206 + DvMF_1325 0.45 +1.4
1,619,311 + DvMF_1325 0.48 +1.0
1,619,392 + DvMF_1325 0.50 +1.3
1,619,499 - DvMF_1325 0.54 +1.7
1,619,646 - DvMF_1325 0.58 +1.9
1,619,843 - DvMF_1325 0.64 +1.2
1,619,987 + DvMF_1325 0.68 +1.2
1,619,992 + DvMF_1325 0.68 +1.3
1,620,048 + DvMF_1325 0.70 +1.5
1,620,124 + DvMF_1325 0.72 +1.2
1,620,380 - DvMF_1325 0.80 +1.1
1,620,551 - DvMF_1325 0.85 +1.2
1,620,661 - DvMF_1325 0.88 +1.3
1,620,886 - +1.3
1,621,011 + +1.2
1,621,065 - +0.5
1,621,208 + +0.4
1,621,271 - +0.2
1,621,444 - DvMF_1326 0.17 +0.8
1,621,510 - DvMF_1326 0.25 +0.8
1,621,539 + DvMF_1326 0.28 +0.7
1,621,547 - DvMF_1326 0.29 +0.7
1,621,706 + DvMF_1326 0.48 +1.0
1,621,714 - DvMF_1326 0.49 +0.5
1,621,714 - DvMF_1326 0.49 +0.6
1,621,714 - DvMF_1326 0.49 -1.2
1,621,750 - DvMF_1326 0.53 +0.6
1,621,785 + DvMF_1326 0.57 +0.6
1,621,835 + DvMF_1326 0.63 +0.8
1,621,958 - DvMF_1326 0.78 +0.5
1,622,028 + DvMF_1326 0.86 +0.6

Or see this region's nucleotide sequence