Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1200

Experiment: 8 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1199 and DvMF_1200 are separated by 160 nucleotidesDvMF_1200 and DvMF_1201 are separated by 151 nucleotides DvMF_1199: DvMF_1199 - putative ABC transporter solute-binding protein (RefSeq), at 1,477,007 to 1,478,299 _1199 DvMF_1200: DvMF_1200 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,478,460 to 1,479,596 _1200 DvMF_1201: DvMF_1201 - protein of unknown function DUF161 (RefSeq), at 1,479,748 to 1,480,611 _1201 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -1 0 1 2at 1477.519 kb on - strand, within DvMF_1199at 1477.752 kb on - strand, within DvMF_1199at 1477.800 kb on - strand, within DvMF_1199at 1477.819 kb on + strand, within DvMF_1199at 1478.004 kb on - strand, within DvMF_1199at 1478.140 kb on - strand, within DvMF_1199at 1478.236 kb on - strandat 1478.326 kb on + strandat 1478.480 kb on - strandat 1478.522 kb on + strandat 1478.740 kb on + strand, within DvMF_1200at 1478.950 kb on + strand, within DvMF_1200at 1479.279 kb on + strand, within DvMF_1200at 1479.472 kb on - strand, within DvMF_1200at 1480.117 kb on + strand, within DvMF_1201at 1480.274 kb on + strand, within DvMF_1201at 1480.415 kb on - strand, within DvMF_1201at 1480.459 kb on - strand, within DvMF_1201at 1480.583 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
remove
1,477,519 - DvMF_1199 0.40 +0.2
1,477,752 - DvMF_1199 0.58 +2.2
1,477,800 - DvMF_1199 0.61 +0.3
1,477,819 + DvMF_1199 0.63 +1.2
1,478,004 - DvMF_1199 0.77 +0.8
1,478,140 - DvMF_1199 0.88 +2.0
1,478,236 - +0.6
1,478,326 + +1.7
1,478,480 - +0.8
1,478,522 + +0.7
1,478,740 + DvMF_1200 0.25 +1.5
1,478,950 + DvMF_1200 0.43 +0.7
1,479,279 + DvMF_1200 0.72 +0.2
1,479,472 - DvMF_1200 0.89 +0.7
1,480,117 + DvMF_1201 0.43 +0.7
1,480,274 + DvMF_1201 0.61 +0.5
1,480,415 - DvMF_1201 0.77 +0.5
1,480,459 - DvMF_1201 0.82 +0.4
1,480,583 + +0.2

Or see this region's nucleotide sequence