Experiment: 8 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1152 and DvMF_1153 are separated by 220 nucleotides DvMF_1153 and DvMF_1154 are separated by 168 nucleotides DvMF_1154 and DvMF_1155 are separated by 135 nucleotides
DvMF_1152: DvMF_1152 - Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme (RefSeq), at 1,413,260 to 1,414,408
_1152
DvMF_1153: DvMF_1153 - Phenylacetate--CoA ligase (RefSeq), at 1,414,629 to 1,415,933
_1153
DvMF_1154: DvMF_1154 - protein of unknown function DUF456 (RefSeq), at 1,416,102 to 1,416,611
_1154
DvMF_1155: DvMF_1155 - RNA methyltransferase, TrmH family, group 1 (RefSeq), at 1,416,747 to 1,417,547
_1155
Position (kb)
1414
1415
1416 Strain fitness (log2 ratio)
-1
0
1 at 1413.799 kb on + strand, within DvMF_1152 at 1413.901 kb on + strand, within DvMF_1152 at 1414.027 kb on + strand, within DvMF_1152 at 1414.096 kb on - strand, within DvMF_1152 at 1414.108 kb on + strand, within DvMF_1152 at 1414.249 kb on - strand, within DvMF_1152 at 1414.705 kb on + strand at 1414.875 kb on - strand, within DvMF_1153 at 1414.935 kb on - strand, within DvMF_1153 at 1415.160 kb on - strand, within DvMF_1153 at 1415.264 kb on - strand, within DvMF_1153 at 1415.293 kb on + strand, within DvMF_1153 at 1415.331 kb on - strand, within DvMF_1153 at 1415.358 kb on + strand, within DvMF_1153 at 1415.391 kb on - strand, within DvMF_1153 at 1415.420 kb on - strand, within DvMF_1153 at 1415.484 kb on - strand, within DvMF_1153 at 1415.633 kb on + strand, within DvMF_1153 at 1415.839 kb on + strand at 1415.847 kb on - strand at 1415.910 kb on - strand at 1416.053 kb on + strand at 1416.162 kb on - strand, within DvMF_1154 at 1416.591 kb on + strand at 1416.596 kb on + strand at 1416.604 kb on - strand at 1416.647 kb on + strand at 1416.890 kb on + strand, within DvMF_1155
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 37C remove 1,413,799 + DvMF_1152 0.47 +0.2 1,413,901 + DvMF_1152 0.56 +0.4 1,414,027 + DvMF_1152 0.67 -0.0 1,414,096 - DvMF_1152 0.73 +0.6 1,414,108 + DvMF_1152 0.74 +0.8 1,414,249 - DvMF_1152 0.86 +0.8 1,414,705 + +0.6 1,414,875 - DvMF_1153 0.19 +1.2 1,414,935 - DvMF_1153 0.23 +1.4 1,415,160 - DvMF_1153 0.41 +0.7 1,415,264 - DvMF_1153 0.49 -0.1 1,415,293 + DvMF_1153 0.51 +0.7 1,415,331 - DvMF_1153 0.54 +0.2 1,415,358 + DvMF_1153 0.56 +0.4 1,415,391 - DvMF_1153 0.58 +0.5 1,415,420 - DvMF_1153 0.61 +0.4 1,415,484 - DvMF_1153 0.66 +0.9 1,415,633 + DvMF_1153 0.77 +0.2 1,415,839 + +0.5 1,415,847 - +1.2 1,415,910 - +0.4 1,416,053 + +0.3 1,416,162 - DvMF_1154 0.12 -0.4 1,416,591 + +0.5 1,416,596 + +0.3 1,416,604 - -0.7 1,416,647 + +0.4 1,416,890 + DvMF_1155 0.18 +0.5
Or see this region's nucleotide sequence