Experiment: 8 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1140 and DvMF_1141 are separated by 260 nucleotides DvMF_1141 and DvMF_1142 are separated by 255 nucleotides
DvMF_1140: DvMF_1140 - hypothetical protein (RefSeq), at 1,397,430 to 1,398,311
_1140
DvMF_1141: DvMF_1141 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,398,572 to 1,401,739
_1141
DvMF_1142: DvMF_1142 - SNARE associated Golgi protein (RefSeq), at 1,401,995 to 1,402,645
_1142
Position (kb)
1398
1399
1400
1401
1402 Strain fitness (log2 ratio)
-1
0
1
2 at 1397.654 kb on + strand, within DvMF_1140 at 1397.836 kb on + strand, within DvMF_1140 at 1398.244 kb on + strand at 1398.244 kb on + strand at 1398.250 kb on - strand at 1398.548 kb on - strand at 1398.765 kb on - strand at 1398.967 kb on + strand, within DvMF_1141 at 1399.068 kb on + strand, within DvMF_1141 at 1399.156 kb on - strand, within DvMF_1141 at 1399.156 kb on - strand, within DvMF_1141 at 1399.161 kb on - strand, within DvMF_1141 at 1399.163 kb on + strand, within DvMF_1141 at 1399.397 kb on + strand, within DvMF_1141 at 1399.602 kb on - strand, within DvMF_1141 at 1399.625 kb on + strand, within DvMF_1141 at 1399.708 kb on + strand, within DvMF_1141 at 1399.741 kb on + strand, within DvMF_1141 at 1399.746 kb on + strand, within DvMF_1141 at 1399.933 kb on - strand, within DvMF_1141 at 1400.130 kb on + strand, within DvMF_1141 at 1400.157 kb on + strand, within DvMF_1141 at 1400.295 kb on - strand, within DvMF_1141 at 1400.387 kb on + strand, within DvMF_1141 at 1400.554 kb on - strand, within DvMF_1141 at 1400.558 kb on + strand, within DvMF_1141 at 1400.566 kb on - strand, within DvMF_1141 at 1400.845 kb on + strand, within DvMF_1141 at 1400.853 kb on - strand, within DvMF_1141 at 1400.870 kb on - strand, within DvMF_1141 at 1400.918 kb on + strand, within DvMF_1141 at 1401.073 kb on + strand, within DvMF_1141 at 1401.289 kb on + strand, within DvMF_1141 at 1401.314 kb on + strand, within DvMF_1141 at 1401.401 kb on + strand, within DvMF_1141 at 1401.444 kb on - strand at 1401.679 kb on + strand at 1401.865 kb on - strand at 1402.138 kb on + strand, within DvMF_1142 at 1402.138 kb on + strand, within DvMF_1142 at 1402.418 kb on + strand, within DvMF_1142 at 1402.553 kb on - strand, within DvMF_1142
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 37C remove 1,397,654 + DvMF_1140 0.25 +0.1 1,397,836 + DvMF_1140 0.46 +0.6 1,398,244 + +0.4 1,398,244 + +1.3 1,398,250 - +0.4 1,398,548 - +0.5 1,398,765 - +1.1 1,398,967 + DvMF_1141 0.12 +0.9 1,399,068 + DvMF_1141 0.16 +0.7 1,399,156 - DvMF_1141 0.18 +1.1 1,399,156 - DvMF_1141 0.18 +0.9 1,399,161 - DvMF_1141 0.19 +1.0 1,399,163 + DvMF_1141 0.19 +1.4 1,399,397 + DvMF_1141 0.26 +0.6 1,399,602 - DvMF_1141 0.33 +0.9 1,399,625 + DvMF_1141 0.33 +1.3 1,399,708 + DvMF_1141 0.36 +1.4 1,399,741 + DvMF_1141 0.37 +0.8 1,399,746 + DvMF_1141 0.37 +1.0 1,399,933 - DvMF_1141 0.43 +1.3 1,400,130 + DvMF_1141 0.49 +1.1 1,400,157 + DvMF_1141 0.50 +0.7 1,400,295 - DvMF_1141 0.54 +2.2 1,400,387 + DvMF_1141 0.57 +1.2 1,400,554 - DvMF_1141 0.63 +1.0 1,400,558 + DvMF_1141 0.63 +1.0 1,400,566 - DvMF_1141 0.63 +1.3 1,400,845 + DvMF_1141 0.72 +0.9 1,400,853 - DvMF_1141 0.72 +1.2 1,400,870 - DvMF_1141 0.73 +0.8 1,400,918 + DvMF_1141 0.74 +0.1 1,401,073 + DvMF_1141 0.79 +1.1 1,401,289 + DvMF_1141 0.86 +0.9 1,401,314 + DvMF_1141 0.87 +1.0 1,401,401 + DvMF_1141 0.89 +1.7 1,401,444 - +0.6 1,401,679 + +1.4 1,401,865 - +0.4 1,402,138 + DvMF_1142 0.22 +0.1 1,402,138 + DvMF_1142 0.22 +0.6 1,402,418 + DvMF_1142 0.65 +1.0 1,402,553 - DvMF_1142 0.86 +0.4
Or see this region's nucleotide sequence