Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0967

Experiment: 8 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0966 and DvMF_0967 are separated by 283 nucleotidesDvMF_0967 and DvMF_0968 are separated by 576 nucleotides DvMF_0966: DvMF_0966 - metal dependent phosphohydrolase (RefSeq), at 1,172,409 to 1,173,440 _0966 DvMF_0967: DvMF_0967 - putative transcriptional regulator, XRE family (RefSeq), at 1,173,724 to 1,174,221 _0967 DvMF_0968: DvMF_0968 - hypothetical protein (RefSeq), at 1,174,798 to 1,176,069 _0968 Position (kb) 1173 1174 1175Strain fitness (log2 ratio) -2 -1 0 1 2at 1172.734 kb on + strand, within DvMF_0966at 1172.742 kb on - strand, within DvMF_0966at 1172.982 kb on + strand, within DvMF_0966at 1172.990 kb on - strand, within DvMF_0966at 1172.990 kb on - strand, within DvMF_0966at 1173.036 kb on - strand, within DvMF_0966at 1173.036 kb on - strand, within DvMF_0966at 1173.053 kb on + strand, within DvMF_0966at 1173.189 kb on - strand, within DvMF_0966at 1173.200 kb on + strand, within DvMF_0966at 1173.358 kb on - strandat 1173.591 kb on + strandat 1173.637 kb on + strandat 1173.640 kb on - strandat 1173.792 kb on - strand, within DvMF_0967at 1174.067 kb on + strand, within DvMF_0967at 1174.557 kb on - strandat 1174.592 kb on - strandat 1174.654 kb on - strandat 1174.798 kb on - strandat 1174.984 kb on - strand, within DvMF_0968at 1175.148 kb on + strand, within DvMF_0968at 1175.170 kb on - strand, within DvMF_0968

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 37C
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1,172,734 + DvMF_0966 0.31 +0.1
1,172,742 - DvMF_0966 0.32 -0.2
1,172,982 + DvMF_0966 0.56 -0.1
1,172,990 - DvMF_0966 0.56 -0.3
1,172,990 - DvMF_0966 0.56 -0.5
1,173,036 - DvMF_0966 0.61 -0.8
1,173,036 - DvMF_0966 0.61 -0.9
1,173,053 + DvMF_0966 0.62 +2.0
1,173,189 - DvMF_0966 0.76 -0.9
1,173,200 + DvMF_0966 0.77 -2.1
1,173,358 - -0.0
1,173,591 + +0.2
1,173,637 + +0.2
1,173,640 - +0.8
1,173,792 - DvMF_0967 0.14 +0.2
1,174,067 + DvMF_0967 0.69 -0.2
1,174,557 - +0.4
1,174,592 - +1.7
1,174,654 - +0.5
1,174,798 - +0.8
1,174,984 - DvMF_0968 0.15 +0.0
1,175,148 + DvMF_0968 0.28 -0.3
1,175,170 - DvMF_0968 0.29 -0.0

Or see this region's nucleotide sequence